RNA id: TU250935


Basic Information

Item Value
RNA id TU250935
length 253
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G211838
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15705749 ~ 15706001 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcttaggcacatgcaaagaaatgctgtagagcaaagacgccttcaaaaataatgaaattaaatgtttctacattaaaaaaatactataaagagcagtaaacagtaataaatgaaacaaagtcaatatttggtgtgacgatccttcgctttaaaaaaaaatagtagtctcaggtacagtgtgtgcagttttataaggaaatgagctgtaaatgttactgagcatcttgcagaagcagccacagttcttctggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250605 lncRNA upstream 216767 15486537 ~ 15488982 (+) True G211543
TU250602 lncRNA upstream 234045 15469549 ~ 15471704 (+) True G211540
XR_004579350.1 lncRNA upstream 501091 15203522 ~ 15204658 (+) True LOC117598819
TU250383 lncRNA upstream 695098 15010142 ~ 15010651 (+) True G211338
TU250374 lncRNA upstream 714299 14988144 ~ 14991450 (+) False LOC117598752
TU250953 lncRNA downstream 133771 15839772 ~ 15840000 (+) True G211856
TU251141 lncRNA downstream 440378 16146379 ~ 16148542 (+) True G212033
TU251137 lncRNA downstream 446254 16152255 ~ 16153553 (+) True G212029
TU251138 lncRNA downstream 447615 16153616 ~ 16154250 (+) True G212030
TU251286 lncRNA downstream 870422 16576423 ~ 16616678 (+) True G212172
XM_034310047.1 mRNA upstream 42060 15617283 ~ 15663689 (+) True rnf213a
XM_026916011.2 mRNA upstream 139186 15548504 ~ 15566563 (+) True LOC113527870
XM_026917304.2 mRNA upstream 171469 15523093 ~ 15534280 (+) True mafga
XM_026917305.2 mRNA upstream 171469 15523093 ~ 15534280 (+) False mafga
XM_026916402.2 mRNA upstream 185182 15509927 ~ 15520567 (+) True samd9l
XM_026916859.2 mRNA downstream 116781 15822782 ~ 15826921 (+) True LOC113528350
XM_026916860.2 mRNA downstream 116781 15822782 ~ 15826921 (+) False LOC113528350
XM_026916193.2 mRNA downstream 434441 16140442 ~ 16146326 (+) True LOC113527983
XM_026916730.2 mRNA downstream 694753 16400754 ~ 16494702 (+) True LOC113528274
XM_026916731.1 mRNA downstream 694753 16400754 ~ 16453474 (+) False LOC113528274
XR_004579399.1 other upstream 2212899 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 3517160 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 4127926 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 4168584 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 5287868 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 107241 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 212216 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 434329 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 1381290 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 2478018 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile