RNA id: TU251114


Basic Information

Item Value
RNA id TU251114
length 1214
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G212006
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15940586 ~ 15942509 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATATTGCTAAATGGGATCTTTGTAGTTTTTAATTTGCCTAATATTAGTCTATTTGcccaatatttatttataaagttgtTTAGACTTCAAAACAAAGTGCTAACTTAGAGATCCCACATGTATCTTATTAAACCTTTTTAAGGTAATAAAAAGCCTCTTACTGTcaaaaattaaagaacaaaatccATATGTTTTGATTTCAAAATATACTTTTAATTCCCTTCTTTTCAATTCATCTTTATTGTCTTTATACCTTACACATACCTTATAACCAGACATTAGAAACGTAACAGTACAATGTAagagacaacacacacagcaatactTGATGTAAAACAGTACACATGCAAGCTGTAACCATTCTAAACTCCGGTGGTGCAAGGGGAGGTAGAGGTAGATAGTTTAATAGCTTATAATCTGGGCCTAATTGCCCCAGGAATGGTACTGCACATTCTAATCCtgatataattcattcattcattcattcattcattcatcattaattcattcattcatcacctGCTGTATCCTACATCACCTGCTGTATCCTGAGCAAGGTCCCAGTGGATCCTGGTAAAATTGGGCACAAGGCTATAAAATTTACTCTGGATGGGACTCCATTCCACAACTGCTGAGCTCCTAGGATTTCCAGACACAACCttctctagattttacacagaatggtgcaaaaaacaaaaaaacacttagtgagtgacagttctctgggtggaaatgccttgttgtaGGAGCCAGAAGAGATCACTAATAGAGAATTTACAACATGTGTCTTGTTACTGGTGATAACTGTGACTTGAAAGGGTTAATGTTAACAAAAAGCAACAAATTCTCAAGCAGCGCTAGAATGTCTCTCTAAACTAGACACATACTTCTTAACCATTGTGTAGCGTGTGCTTGACAATCAGGGAGATGTATTGGTCTATGACTGTTAAGGAAAATACACCCTATCGATCGTCTCTATAGCTATGCAGCTGTTGGGGATGACTGGATACTTCCAGGAGCACACCATTAACTATTCTCTGCCTCTGCTTTCCAACACCTCAATGAAAAAAGTCATCTTTTGTTTGCCTCTTGAGTACCATCTACACACCTGTGGGCCATTGCTGCAggcatgtgtgggtgtgtgggggATGTTATGATTGCTGCCGCTTAATGGAGACGTGTTGACGAAATGGGGCTGGATTTGACTTAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250904 lncRNA downstream 303595 15635735 ~ 15636991 (-) True G211810
TU250902 lncRNA downstream 305312 15634946 ~ 15635274 (-) True G211808
TU250901 lncRNA downstream 306689 15633680 ~ 15633897 (-) True G211807
TU250900 lncRNA downstream 309214 15630772 ~ 15631372 (-) True G211806
TU250899 lncRNA downstream 310617 15628733 ~ 15629969 (-) True G211805
TU251124 lncRNA upstream 94607 16037116 ~ 16037317 (-) True G212016
TU251126 lncRNA upstream 97247 16039756 ~ 16040399 (-) True G212018
TU251177 lncRNA upstream 208596 16151105 ~ 16153514 (-) False LOC113528178
TU251176 lncRNA upstream 209229 16151738 ~ 16153570 (-) False LOC113528178
XR_003402922.2 lncRNA upstream 511051 16453560 ~ 16455847 (-) True LOC113528275
XM_026916317.2 mRNA downstream 323202 15607444 ~ 15617384 (-) True LOC113528053
XM_034310048.1 mRNA downstream 323647 15607445 ~ 15616939 (-) False LOC113528053
XM_034309803.1 mRNA downstream 345382 15582604 ~ 15595204 (-) False LOC113528397
XM_034309802.1 mRNA downstream 345382 15582604 ~ 15595204 (-) True LOC113528397
XM_026917092.2 mRNA downstream 359521 15578454 ~ 15581065 (-) True LOC113528505
XM_034310215.1 mRNA upstream 208566 16151075 ~ 16203991 (-) False LOC113528178
XM_034310214.1 mRNA upstream 208566 16151075 ~ 16203991 (-) True LOC113528178
XM_034310216.1 mRNA upstream 208566 16151075 ~ 16203639 (-) False LOC113528178
XM_026916252.2 mRNA upstream 283142 16225651 ~ 16227442 (-) True LOC113528022
XM_026917098.2 mRNA upstream 384376 16326885 ~ 16330539 (-) True sox8a
XR_003402969.1 other downstream 468674 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 1250454 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 1419611 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 1449811 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 1910945 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 1350342 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 1350342 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 1350342 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 1350342 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 1350342 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile