RNA id: TU251126


Basic Information

Item Value
RNA id TU251126
length 644
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G212018
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16039756 ~ 16040399 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gccttatgtcccagggtgccctcatgtctgtgttagcttctgactctcccttttagttatgctgtcatagctagtcctgccggagtccctgcttgcactctgcacgcaaagtacattgtccttaaccattagaggacaaaagcttacctaacaatctctccctctctctccatctctctctctccctcactctctgtcgagctgcacatgctacttctgagatgccagtgatcctgaccccttctgctcctcctcgctgcctgacccatcctgatgccccttctgctcctcctcgctgcttgacccatcctgatgccctacttctggttggagttctcatcggttgagtttgctcactgctgctgggggcggccccatatggacgatctgaagaaccatttggtttgctggggatagtgccacctgggggctgtggagatggcttggggatcacatattggTAGCTATACTGTAATGGcctgggactgcgattgctgtagtgggtttggggctgcggttgccacgactccatcagtggacagtggaaagattttaaccaaccggacttcttgcaaaaactgtgatgaatttattggttgcacaattgcactatttgtccatatagtacacaataatagaaggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251124 lncRNA downstream 2439 16037116 ~ 16037317 (-) True G212016
TU251041 lncRNA downstream 70981 15892024 ~ 15968775 (-) True G211935
TU251035 lncRNA downstream 70981 15898090 ~ 15968775 (-) False G211935
TU251036 lncRNA downstream 70981 15898090 ~ 15968775 (-) False G211935
TU251114 lncRNA downstream 97247 15940586 ~ 15942509 (-) True G212006
TU251177 lncRNA upstream 110706 16151105 ~ 16153514 (-) False LOC113528178
TU251176 lncRNA upstream 111339 16151738 ~ 16153570 (-) False LOC113528178
XR_003402922.2 lncRNA upstream 413161 16453560 ~ 16455847 (-) True LOC113528275
TU251459 lncRNA upstream 438492 16478891 ~ 16497232 (-) True G212319
TU251473 lncRNA upstream 532721 16573120 ~ 16573567 (-) False LOC113528039
XM_026916317.2 mRNA downstream 422372 15607444 ~ 15617384 (-) True LOC113528053
XM_034310048.1 mRNA downstream 422817 15607445 ~ 15616939 (-) False LOC113528053
XM_034309803.1 mRNA downstream 444552 15582604 ~ 15595204 (-) False LOC113528397
XM_034309802.1 mRNA downstream 444552 15582604 ~ 15595204 (-) True LOC113528397
XM_026917092.2 mRNA downstream 458691 15578454 ~ 15581065 (-) True LOC113528505
XM_034310215.1 mRNA upstream 110676 16151075 ~ 16203991 (-) False LOC113528178
XM_034310214.1 mRNA upstream 110676 16151075 ~ 16203991 (-) True LOC113528178
XM_034310216.1 mRNA upstream 110676 16151075 ~ 16203639 (-) False LOC113528178
XM_026916252.2 mRNA upstream 185252 16225651 ~ 16227442 (-) True LOC113528022
XM_026917098.2 mRNA upstream 286486 16326885 ~ 16330539 (-) True sox8a
XR_003402969.1 other downstream 567844 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 1349624 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 1518781 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 1548981 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 2010115 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 1252452 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 1252452 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 1252452 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 1252452 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 1252452 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile