RNA id: TU251141


Basic Information

Item Value
RNA id TU251141
length 2164
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G212033
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16146379 ~ 16148542 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCATCTTTTAGGAACATTTGTCTTACTCTTCATTTGTAATATcatgaatatattaaaatattgttcTAGTAATATTTCAGGACTTTTGTACACTCTTGGGTCTGTGCACATTATATTGTTTGGATGAAGCCACTGCAAATGGGAGAGCAAGATGACCATGGAGTTTTCCAGACCGCTGACAGCAGACAGTCAAGTAACTCTACCATATAAGCAGTCAAGGGTTGCCTGCTGTTGACAAGTCACCCCGGGAGAAGAGTCTTATCATTCTGGAGCATGCTCACAAATGCAACTCACATTACTAACAGTGCAGTACTCATCTATCTGTTTTCATGGAATAATCTCTTTTTCTTTGGAGAGTGAAATGTTGGAAGAAGTACTACTCTTAATGAAATCCCTTAAATTCTTATTATTGTAAGTGTTGTCGCAGATATTCAGGCTTTTGGACTATTCAAAAGTAAAGGTGGGTGTGGCATTGCCTATGAAAGTGTACTATGAATGTACAGAAGGTACCTGGATGTCTATAATCATGTAATCCTTCCTTTCTGACAGGATGAACAGTTttgtattttccttttttcctgtaAATAGTATTTGCTAAGACCTCTGCAAGGTACACGATTCATGTGAACTGTCCCTCTCTTATCCAAATGTAGCTTGCCTATCATATTTAATGGAATAGCTGCTGGCTTAACACTAACCAAACTGCTGCTAGATTGTATAAATTTCTGTTTAATTCTGGAGATGTTACTGTCTAGCTCTTGTCATAACCTTGTTTAAAATGTACTACCTTCGCTGACTGGGCACATATCTGTTATGCAGAATAAATTACTCTCAGtgctttatatactgtataattacaGTCCGTAAATATCTTGTGCCATTTATTAGTAGTTTGTATCAAAACAGCTTGACTGATATTTATATCCCCTGAAGTGTTGATGTATTTGTAACTCAAGTCTCAAGAGTTTTTCCTCTATATTACTTGTAGACATTGGAACAAAATCTTGTTTCATTCAGGACCATGATGCAACACATAatacagcagcacaatacacaGTAAGTACAAATACACATCAGTGTGAGATGCTTGTTTTCTCTATGTCTGTTTACTCCAGTCTTTATGGAGCTGTCAAATTGAGAAGGGCTAGAACATGTGCTTTCTTGGGCAGTCATGTTCCTTTAAATTCCTTGCAGCTTCTTTCACTCGTCTTATCCTGAGAATCCTTTGCCTGCTATGGTTCTTGGTAAAAATGGGAACCAGGCTATTGGTGTGATCACATGTATCTGAAAGGGTTGCTTTCTGTGTCTTTTCCCATGTTTGGACATGCCAGTGTTTGAAGGTGCTCTCTTTAAATAGAGTCTATTTCTAGTGTTTGCTCTAGTTCTTGTTCAAATGTCACTTTACTGCAAGAACAGTTGTGTTTAAAATCAACAGAAGCTCTGCTACCTGTAGATATATAGAATGCACATCATTTAGATGAATAAAAGAAACTGTCTGTAGATATTGATACAGTGACCAAACCCTTGCAGGCTAACTATACGTTTTGAAAGCTTGCACATTAGTGCTAAATTCAGTGCTACAGGGTAGTGAGAAAAACAGAGCATGCTATGTGATACTGTAACTGCATCCATAAACAGatcttttgcattttaattagaGGTTCATTAATCTTAAGGATGAACAGAAATAACAGTGGCAATTCCCTCTCCATTCATTACATGTTCTTGTGTTGGAAGCTTCCCTCACCAGAGTGAACATGGCGTTACTGTATGTTGCATTGCATTATGGGGAAACATCGCCATCTGGTGAGGGTGCGGGTTTGCTGACCCTCTGATAAACATAACATTAATTCAGTTAACAATGTAGACTAGTATGATGTGGCAAACATTATGTtgtcctctttcttctctcatACAATCAGTTTATAATTTTGCAAGTGTTCAATGCCAGGCAGTGACCGAGTTTGAATACTTGTCAATGACTCAATGACTGTCAATTAttctatgttttattttagtgcTTTCATTTTAGTTACCACTAACCAAACATAGCATTTGTATGCTCttgtaaaatgaaatatgtttaatgttaacatACTTCatactgatgatggtgtttgttcagtgtttttacttggaattaaaatgctttttcattAAAC

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250953 lncRNA upstream 306379 15839772 ~ 15840000 (+) True G211856
TU250935 lncRNA upstream 440378 15705749 ~ 15706001 (+) True G211838
TU250605 lncRNA upstream 657397 15486537 ~ 15488982 (+) True G211543
TU250602 lncRNA upstream 674675 15469549 ~ 15471704 (+) True G211540
XR_004579350.1 lncRNA upstream 941721 15203522 ~ 15204658 (+) True LOC117598819
TU251137 lncRNA downstream 3713 16152255 ~ 16153553 (+) True G212029
TU251138 lncRNA downstream 5074 16153616 ~ 16154250 (+) True G212030
TU251286 lncRNA downstream 427881 16576423 ~ 16616678 (+) True G212172
TU251291 lncRNA downstream 429872 16578414 ~ 16584331 (+) True G212174
XR_004579398.1 lncRNA downstream 463655 16612197 ~ 16613446 (+) True LOC117598846
XM_026916193.2 mRNA upstream 53 16140442 ~ 16146326 (+) True LOC113527983
XM_026916859.2 mRNA upstream 319458 15822782 ~ 15826921 (+) True LOC113528350
XM_026916860.2 mRNA upstream 319458 15822782 ~ 15826921 (+) False LOC113528350
XM_034310047.1 mRNA upstream 482690 15617283 ~ 15663689 (+) True rnf213a
XM_026916011.2 mRNA upstream 579816 15548504 ~ 15566563 (+) True LOC113527870
XM_026916730.2 mRNA downstream 252212 16400754 ~ 16494702 (+) True LOC113528274
XM_026916731.1 mRNA downstream 252212 16400754 ~ 16453474 (+) False LOC113528274
XM_026916133.2 mRNA downstream 397099 16545641 ~ 16549914 (+) False LOC113527936
XM_026916132.2 mRNA downstream 397100 16545642 ~ 16549914 (+) False LOC113527936
XM_026916134.2 mRNA downstream 397107 16545649 ~ 16549914 (+) False LOC113527936
TU251142 other upstream 995 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 177620 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 333048 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 2653529 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 3957790 12158706 ~ 12188589 (+) False arhgap17b
TU251743 other downstream 938749 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 2035477 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 2766184 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 2766184 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 2995532 19144074 ~ 19145240 (+) True G213491

Expression Profile