RNA id: TU251177


Basic Information

Item Value
RNA id TU251177
length 2410
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC113528178
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16151075 ~ 16203991 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTGTTTGTGATATTGGTCATGAAATACTGTATGAATTCAGTATCTAGTCTCCATGTTTTGAAGTGTGGACTTGGCTGAAGCAGTAAAGTATGTAGGTCTGGGTCAGCACTGCCATGAAAGCTGAGAGCCTAGGCAAGTCTGTGCTATTTccgttttctgtttatttttatattcttgaGTGTACGCAATCCTCATTCACCTTTTTGGTTTCAGAATTCTCTTCAACAGGGTTTTGTTGGAGTGCAGTTGTTCCTGTCTGCAGGGTTTCCTTCCCCCAAATTTATCATTTGTAtctctgttgtgttttggtgAGGTATTATAAAGCTGATGTTGGTTCTCTGATGAAGAGGAGCAGCAGACCTGACCATTTTTCAAGGCAATATTTGGCAAGACCATTACTACAGTGTTATTTTACTGTTGTGATCTGTGTGCATCTATGCGATTTACCTTTGATCATCCCACAAGAGCCAAGCCTGTAGGCCTATGCAAGGCACGTGTTAAAGGAAGAGTTCACCAGTTTTAAAAATTTCGACAAGCATCTTCTTGCCTCAGCTTTATCTGTAATTGGTAGAGGCAGTTTTCATCACTGAACTGTTTGGTCAAACGCATGCTTTAGAGACCAACTCTCTCAcccagcatttaaaaaaaaaaaactgtatgtaCAAGCGATTACTAAAGGTTGTTTCATATCAACAGCACAGCATGACCGGTAAAGCAAAACATCTCCGCCGTGCAGAGGTGGTGAGTCAAAACCGTCACACAAGTGGCAAGCAGTCAGAAATAGACATGAACTATGAAATTGCACTTAGTGCATGCATCAGGTTTCAAATATTCCATTAgctatattaatgttattattctcacaaacacaataaaacagtaaaatacaacAATTTCATTCTCATCCTCCTCCATCTTCCCCATGATGCTGTGCTTTTGCCTCCTGCAAAATGATGTAACTGTCAAACAGTTTGCATCACTTCTATTATGTTGTAAATGATCCCTGTAATGTGGTAGTGTGGCAGACACACAAAACAGGAACTCTTCCAGGAACCAGTGACCCGGGATAAGAATATGGCCACAGGTTTTGTCCTAACACACAATTAGTTTGACATCTGGTCACTTACCTTCAGACGgtataaaatgtgatttaatcTGAGCTTGCCATGTAGGTGCTTACTGTAAGCATTTTAATGGAAGCTGCATTACTGACTCTTCCTGCTGACCTAAACGTTTCTATGCCTCTTCTCAGGCCGCATACATCCATAGTAGTATGGATAGTAAGGCATTTGAAATGttcctaattttatttttttcacacactacagcatGCATAAGCCTATGCACTTAAAAGCATGACATAGCACATGGTAACATAGTGTGTATTATGCGGTTATGGTTTATTCCCCCAACCCCCCTGCCCCTCCCGAACTGAGTTCCAACACACAACCCCGCCTGCTCTAGAGCACCTGATAGATAGTGGGTAAAGGTGGGCTaagcaatttttaaaacagttttaagaacactttttcatattttactaTTTGGCGTCCTCACATTTCAGCTTCAGTCAAAGCTGCCAGAAGAAACTCCACTCTCTGTAGCACCCCAGAGTCTGTAAACCACGGGGAAAATTTTATGTGGCCCTCCAACAAATCACGCTAAATTGGCATCTCGAGCTGTGTGTTAATCATGTTTGGGCTGTTCAACCATCTTGCATTAGCCATTAGGTGTTTTGAGGACATGGCTTCAGAGGGACCACTAAAGGAAGGGGCTAAATTTGTTTTTAGcctaaatttgattttttttttttttttttttcaaagcttcCAGCTTTAgctaacctctaccaaagtaaaaaaaaaatctttatttatctttaataatCACAAACAGTCCACTCTCAAGAAAGTGTTATAATGCAAATGGGTCGTACTAACCAGCCCTAGAGCAGGAGGTGTGAATTGTTGGAATACACAAGGGTCCGTCTCCGGCAGTATTCTCTGTGGCATCGTGCCTTGCGCACACTGGTGCCTCTGCACACAAACCCAGTGCTGCTCTTTTAAATCCATATGCTGTTTCCATGTGGAGCTAAAGACAGAAAATAACACCAGTAtatttgtgtgtctctgtgattttattaatATCACTTTTCACCGAAAGAACTCCTACATCAAGGTTGCACGGCTTATGCCAAGTCAGCAGTTGCAGTTGGCATATGGTAATGCCACACCGAAGACCTCAAAATATAACTGGTGTGCTTATGTTAGATGAGTCTTAGCCAGTTCATTTGGTCTGCTGcagaatttttttccctttctatGCCAGAACTAAATGGGGTGAAGTAAACGATCAGGGCTTGTCTGGAGTCTCACTATGGCCATTTGGTCATTCAGGGAAACAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251126 lncRNA downstream 110706 16039756 ~ 16040399 (-) True G212018
TU251124 lncRNA downstream 113788 16037116 ~ 16037317 (-) True G212016
TU251041 lncRNA downstream 182330 15892024 ~ 15968775 (-) True G211935
XR_003402922.2 lncRNA upstream 300046 16453560 ~ 16455847 (-) True LOC113528275
TU251459 lncRNA upstream 325377 16478891 ~ 16497232 (-) True G212319
TU251473 lncRNA upstream 419606 16573120 ~ 16573567 (-) False LOC113528039
TU251546 lncRNA upstream 527670 16681184 ~ 16690337 (-) True G212395
TU251514 lncRNA upstream 607718 16761232 ~ 16764671 (-) True LOC113527915
XM_026916317.2 mRNA downstream 533721 15607444 ~ 15617384 (-) True LOC113528053
XM_034310048.1 mRNA downstream 534166 15607445 ~ 15616939 (-) False LOC113528053
XM_034309803.1 mRNA downstream 555901 15582604 ~ 15595204 (-) False LOC113528397
XM_034309802.1 mRNA downstream 555901 15582604 ~ 15595204 (-) True LOC113528397
XM_026917092.2 mRNA downstream 570040 15578454 ~ 15581065 (-) True LOC113528505
XM_026916252.2 mRNA upstream 72137 16225651 ~ 16227442 (-) True LOC113528022
XM_026917098.2 mRNA upstream 173371 16326885 ~ 16330539 (-) True sox8a
XM_026916944.2 mRNA upstream 347607 16501121 ~ 16537254 (-) True LOC113528411
XM_026916166.2 mRNA upstream 384867 16538381 ~ 16545640 (-) True LOC113527963
XM_026916292.2 mRNA upstream 419031 16572545 ~ 16598688 (-) True LOC113528039
XR_003402969.1 other downstream 679193 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 1460973 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 1630130 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 1660330 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 2121464 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 1139337 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 1139337 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 1139337 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 1139337 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 1139337 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile