RNA id: XM_034310214.1


Basic Information

Item Value
RNA id XM_034310214.1
length 5010
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC113528178
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16151075 ~ 16203991 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTGCAGAGCTCATGGTGTACTCTTGAAATCCGTGTTGCTGTTGCCGACCATAAAAATCTGTTGAGTGCAAGTGGAAGTAGCAAATGTTAAACGCTAGCTAACGCGATACGGCCAGAAACAGCAGTCTGCAGACCAGCTGATGTAACAAAGGTCAAGATAACGAGCAGCACTTTTTCTGAGTAGATGCCCGCTTTTCGTCCTGGACCTTTCAGTACCATTAGTGGATCCGTTTTCATTCGGAAACCGTGCTGGacagttagcttgctagtgCTGAGAGCTAGTTCACGTTATTTCTCCTCGGACACGTTTCCTCCCTTTAAACCCCCTCAAGCTGAATGTGCTTTCTGTCATGTGTCCGGCCGGGTGCTCCCATGTGAACGGTTTCAAAGTGGACAATTGGAAGCAAAACCTGCGAGTCATATATCAGTGCTTTGTGTGGACCGGCACCGCAGAAACCAGGAGACGGAAGCCAACAAGTTCTCAGCAGCCACGTGTACTTGAGCCAAGACCAGTTACAGAGGAAGAGgCAAAGTCGTGTATCTGTCACATGTGTGGCGCTCACCTGAACCGGCTGCATTCGTGCCTATACTGTGTCTTCTTCGGCTGCTTCTCCAAGAAACACATCCACGAACACGCCAAAAACAAACGACATAACCTAGCTATTGACTTGTTATATGGTGGAATATACTGCTTCGTTTGTCAAGACTACATATACGACAAAGACATGGAACAGATCGCCAAAGAAGAACAGAGGAAGGCCTGGAAACTTCAAGGTGTAGGGGAAAAATATTCAACATGGGAGCCCACCAAGCGGGAGCTGGAGCTGCTACGCCATAATCCAAAGCGCAGGAAAATTACTTCCAACTGCACTATAGgtTTACGGGGCTTGATCAACTTGGGCAACACATGCTTCATGAACTGCATTGTGCAGGCACTCACGCACACTCCCCTGCTGCGTGACTTCTTCCTCTCGGACCGGCACAAGTGTGAGATGCAGGCCAACTCCTGCCTGGTGTGTGAGATGTCTCAGCTCTTTCAAGAGTTCTATTCGGGCCACCGGTCTCCCCACATCCCATTCCGGCTGCTGCACCTGGTGTGGACACACGCGCGTCACCTGGCCGGCTATGAGCAGCAGGATGCACATGAATTCCTCATCGCCGCCCTGGATGTGCTGCACCGCCACTGCAAAGatGATGACAACGGGAAGAAAGCCAACAATCCGAATCACTGTAACTGCATCATTGACCAAATCTTCACTGGCGGACTACAGTCAGATGTGACCTGTCAAGTTTGCCATGGTGTTTCCACTACGATAGACCCGTTCTGGGACATCAGTCTGGACCTGCCTGGCTCATCCACGCCATTCTGGCCTCTGAGTCCGGGAGGCGACAGTGCTGTGGTTAATGGAGAGGGTCACATGACTGGCTCCACCACACTCACAGACTGCCTGCGTCGATTCACTCGGCCTGAGCATCTAGGTAGCAGTGCCAAAATTAAATGCGGAGGTTGTCATAGCTATCAGGAGTCCACCAAACAGCTGACAATGAAGAAGCTTCCTATAGTCGCATGTTTTCATCTGAAGCGCTTTGAGCATTCAGCCAAGTTGCGCAGAAAGATCACTACCTATGTATCGTTCCCCTTAGAACTGGACATGACACCTTTCATGGCCTCCAGTAAAGAGAGCAGAGTAAATGGCCAGTACCAGCAATCAgtagatgtattaaacaacGACAATAAATACTCCCTGTTTGCTGTAGTGAATCACCAGGGCACATTAGAAAGTGGCCACTACACCAGTTTCATCCGCCAGCACAAGGACCAATGGTTTAAATGTGACGATGCCATCATCACCAAGGCCAGCATTAAGGACGTGCTGGACAGTGAAGGGTATTTGTTATTCTACCATAAGCAGTTCCTTGAATACGAGTAGCTTTAACACACCGATCTGCTGACTGTGGAGTGCTTCGTTCACCCAGTGAAAGCGGCTGAGAGGGAGATCACACCTGCAGCAGAGGACACAATTAACACAAGCCTACCTGAAACTGTGACTACCCATCGCTTCCTTCCCACACAGGGGCCAAAGCAAAAGAGACGAAAAACAAAATCATGCAACACATTCAAACCAGCACTGAGCTAACCGTTACTTGATGTGAGAAAAgcggaggagaggaagaagtgCACGACTGCTTTCCGCCTCTCCTGCCACATTCTCCACCGCTGAAAAAAAACGGAGAGGGTGAAATGAACTGATCTGTGAAAACAAGAGTAGAGGGCACATCTCAACTTTGActagtttttgttgtttttgtagagtttttttttttttttttttttccaatttctattttttttttgttttgttttgttattctgTCTTTTCCTCCCCATGGTGCTCTCATTCAAACTGACCAAGCGTTAGAAGCCTGCTGGGGTGAGTCAGTGTCTATTCTGCATATGCATATGAACTCAATgcaacaaaatgtgttaaaaaaaaaaaaaaaaaaatggactagCACATCAAAGAAgttttgcttttgattttatgttttttaaagaaatgattatGAATATTGTTTGTGATATTGGTCATGAAATACTGTATGAATTCAGTATCTAGTCTCCATGTTTTGAAGTGTGGACTTGGCTGAAGCAGTAAAGTATGTAGGTCTGGGTCAGCACTGCCATGAAAGCTGAGAGCCTAGGCAAGTCTGTGCTATTTccgttttctgtttatttttatattcttgaGTGTACGCAATCCTCATTCACCTTTTTGGTTTCAGAATTCTCTTCAACAGGGTTTTGTTGGAGTGCAGTTGTTCCTGTCTGCAGGGTTTCCTTCCCCCAAATTTATCATTTGTAtctctgttgtgttttggtgAGGTATTATAAAGCTGATGTTGGTTCTCTGATGAAGAGGAGCAGCAGACCTGACCATTTTTCAAGGCAATATTTGGCAAGACCATTACTACAGTGTTATTTTACTGTTGTGATCTGTGTGCATCTATGCGATTTACCTTTGATCATCCCACAAGAGCCAAGCCTGTAGGCCTATGCAAGGCACGTGTTAAAGGAAGAGTTCACCAGTTTTAAAAATTTCGACAAGCATCTTCTTGCCTCAGCTTTATCTGTAATTGGTAGAGGCAGTTTTCATCACTGAACTGTTTGGTCAAACGCATGCTTTAGAGACCAACTCTCTCAcccagcatttaaaaaaaaaaaactgtatgtaCAAGCGATTACTAAAGGTTGTTTCATATCAACAGCACAGCATGACCGGTAAAGCAAAACATCTCCGCCGTGCAGAGGTGGTGAGTCAAAACCGTCACACAAGTGGCAAGCAGTCAGAAATAGACATGAACTATGAAATTGCACTTAGTGCATGCATCAGGTTTCAAATATTCCATTAgctatattaatgttattattctcacaaacacaataaaacagtaaaatacaacAATTTCATTCTCATCCTCCTCCATCTTCCCCATGATGCTGTGCTTTTGCCTCCTGCAAAATGATGTAACTGTCAAACAGTTTGCATCACTTCTATTATGTTGTAAATGATCCCTGTAATGTGGTAGTGTGGCAGACACACAAAACAGGAACTCTTCCAGGAACCAGTGACCCGGGATAAGAATATGGCCACAGGTTTTGTCCTAACACACAATTAGTTTGACATCTGGTCACTTACCTTCAGACGgtataaaatgtgatttaatcTGAGCTTGCCATGTAGGTGCTTACTGTAAGCATTTTAATGGAAGCTGCATTACTGACTCTTCCTGCTGACCTAAACGTTTCTATGCCTCTTCTCAGGCCGCATACATCCATAGTAGTATGGATAGTAAGGCATTTGAAATGttcctaattttatttttttcacacactacagcatGCATAAGCCTATGCACTTAAAAGCATGACATAGCACATGGTAACATAGTGTGTATTATGCGGTTATGGTTTATTCCCCCAACCCCCCTGCCCCTCCCGAACTGAGTTCCAACACACAACCCCGCCTGCTCTAGAGCACCTGATAGATAGTGGGTAAAGGTGGGCTaagcaatttttaaaacagttttaagaacactttttcatattttactaTTTGGCGTCCTCACATTTCAGCTTCAGTCAAAGCTGCCAGAAGAAACTCCACTCTCTGTAGCACCCCAGAGTCTGTAAACCACGGGGAAAATTTTATGTGGCCCTCCAACAAATCACGCTAAATTGGCATCTCGAGCTGTGTGTTAATCATGTTTGGGCTGTTCAACCATCTTGCATTAGCCATTAGGTGTTTTGAGGACATGGCTTCAGAGGGACCACTAAAGGAAGGGGCTAAATTTGTTTTTAGcctaaatttgattttttttttttttttttttcaaagcttcCAGCTTTAgctaacctctaccaaagtaaaaaaaaaatctttatttatctttaataatCACAAACAGTCCACTCTCAAGAAAGTGTTATAATGCAAATGGGTCGTACTAACCAGCCCTAGAGCAGGAGGTGTGAATTGTTGGAATACACAAGGGTCCGTCTCCGGCAGTATTCTCTGTGGCATCGTGCCTTGCGCACACTGGTGCCTCTGCACACAAACCCAGTGCTGCTCTTTTAAATCCATATGCTGTTTCCATGTGGAGCTAAAGACAGAAAATAACACCAGTAtatttgtgtgtctctgtgattttattaatATCACTTTTCACCGAAAGAACTCCTACATCAAGGTTGCACGGCTTATGCCAAGTCAGCAGTTGCAGTTGGCATATGGTAATGCCACACCGAAGACCTCAAAATATAACTGGTGTGCTTATGTTAGATGAGTCTTAGCCAGTTCATTTGGTCTGCTGcagaatttttttccctttctatGCCAGAACTAAATGGGGTGAAGTAAACGATCAGGGCTTGTCTGGAGTCTCACTATGGCCATTTGGTCATTCAGGGAAACAGGAGAAGTATTTAACTGATTAAAACCCAACTGGAA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11366 USP22_27_51, UBP8; ubiquitin carboxyl-terminal hydrolase 22/27/51

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251126 lncRNA downstream 110676 16039756 ~ 16040399 (-) True G212018
TU251124 lncRNA downstream 113758 16037116 ~ 16037317 (-) True G212016
TU251035 lncRNA downstream 182300 15898090 ~ 15968775 (-) False G211935
XR_003402922.2 lncRNA upstream 249569 16453560 ~ 16455847 (-) True LOC113528275
TU251459 lncRNA upstream 274900 16478891 ~ 16497232 (-) True G212319
TU251473 lncRNA upstream 369129 16573120 ~ 16573567 (-) False LOC113528039
TU251546 lncRNA upstream 477193 16681184 ~ 16690337 (-) True G212395
TU251514 lncRNA upstream 557241 16761232 ~ 16764671 (-) True LOC113527915
XM_026916317.2 mRNA downstream 533691 15607444 ~ 15617384 (-) True LOC113528053
XM_034310048.1 mRNA downstream 534136 15607445 ~ 15616939 (-) False LOC113528053
XM_034309803.1 mRNA downstream 555871 15582604 ~ 15595204 (-) False LOC113528397
XM_034309802.1 mRNA downstream 555871 15582604 ~ 15595204 (-) True LOC113528397
XM_026917092.2 mRNA downstream 570010 15578454 ~ 15581065 (-) True LOC113528505
XM_026916252.2 mRNA upstream 21660 16225651 ~ 16227442 (-) True LOC113528022
XM_026917098.2 mRNA upstream 122894 16326885 ~ 16330539 (-) True sox8a
XM_026916944.2 mRNA upstream 297130 16501121 ~ 16537254 (-) True LOC113528411
XM_026916166.2 mRNA upstream 334390 16538381 ~ 16545640 (-) True LOC113527963
XM_026916292.2 mRNA upstream 368554 16572545 ~ 16598688 (-) True LOC113528039
XR_003402969.1 other downstream 679163 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 1460943 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 1630100 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 1660300 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 2121434 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 1088860 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 1088860 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 1088860 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 1088860 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 1088860 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile