RNA id: TU251289


Basic Information

Item Value
RNA id TU251289
length 280
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id LOC117598846
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16612197 ~ 16613446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGCCTCGGAGCTCCTTTAAAAGCACGGCGTTGGCGATGCTAAGgAGTTGGGGGACGCCGGCAGGGAGGCTTGGCACCTGGTGGCTGGgtacctgtgtttgtgtgtgtgtgtgtgtgtttcacctttCTGGCAGTGTAGTGTCACCTGGGTGTGctgtgcagtgtatgtgtgcgctTCACGTGTGGTCTTTTTGGACCCTCCTTCCAGATCGCCTCCCTGTGGTAAGCCCCTATCctaatttatgtgtgtgttctgtcctgTAGGCCTACAGAATAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251291 lncRNA upstream 27922 16578414 ~ 16584331 (+) True G212174
TU251138 lncRNA upstream 458003 16153616 ~ 16154250 (+) True G212030
TU251137 lncRNA upstream 458700 16152255 ~ 16153553 (+) True G212029
TU251141 lncRNA upstream 463711 16146379 ~ 16148542 (+) True G212033
TU250953 lncRNA upstream 772253 15839772 ~ 15840000 (+) True G211856
XR_003402954.2 lncRNA downstream 34016 16647361 ~ 16649303 (+) True LOC113528544
TU251333 lncRNA downstream 57314 16670659 ~ 16688548 (+) True G212210
TU251321 lncRNA downstream 63118 16676463 ~ 16695790 (+) True G212201
TU251344 lncRNA downstream 77656 16691001 ~ 16693399 (+) True G212219
TU251395 lncRNA downstream 147807 16761152 ~ 16765092 (+) True G212258
XM_026916132.2 mRNA upstream 62339 16545642 ~ 16549914 (+) False LOC113527936
XM_026916115.2 mRNA downstream 166431 16779776 ~ 16808650 (+) True cfap70
XM_026916118.2 mRNA downstream 166431 16779776 ~ 16808650 (+) False cfap70
XM_026916116.2 mRNA downstream 166431 16779776 ~ 16808650 (+) False cfap70
XM_034310078.1 mRNA downstream 166431 16779776 ~ 16808650 (+) False cfap70
XM_034309870.1 mRNA downstream 195530 16808875 ~ 16819268 (+) False hmox2b
TU251142 other upstream 466869 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 643494 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 798922 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 3119403 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 4423664 12158706 ~ 12188589 (+) False arhgap17b
TU251743 other downstream 473946 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 1570674 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 2301381 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 2301381 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 2530729 19144074 ~ 19145240 (+) True G213491

Expression Profile