Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579398.1 |
| length | 437 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 2 |
| gene id | LOC117598846 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 16612197 ~ 16613446 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU251291 | lncRNA | upstream | 27866 | 16578414 ~ 16584331 (+) | True | G212174 |
| TU251138 | lncRNA | upstream | 457947 | 16153616 ~ 16154250 (+) | True | G212030 |
| TU251137 | lncRNA | upstream | 458644 | 16152255 ~ 16153553 (+) | True | G212029 |
| TU251141 | lncRNA | upstream | 463655 | 16146379 ~ 16148542 (+) | True | G212033 |
| TU250953 | lncRNA | upstream | 772197 | 15839772 ~ 15840000 (+) | True | G211856 |
| XR_003402954.2 | lncRNA | downstream | 33915 | 16647361 ~ 16649303 (+) | True | LOC113528544 |
| TU251333 | lncRNA | downstream | 57213 | 16670659 ~ 16688548 (+) | True | G212210 |
| TU251321 | lncRNA | downstream | 63017 | 16676463 ~ 16695790 (+) | True | G212201 |
| TU251344 | lncRNA | downstream | 77555 | 16691001 ~ 16693399 (+) | True | G212219 |
| TU251395 | lncRNA | downstream | 147706 | 16761152 ~ 16765092 (+) | True | G212258 |
| XM_026916132.2 | mRNA | upstream | 62283 | 16545642 ~ 16549914 (+) | False | LOC113527936 |
| XM_026916115.2 | mRNA | downstream | 166330 | 16779776 ~ 16808650 (+) | True | cfap70 |
| XM_026916118.2 | mRNA | downstream | 166330 | 16779776 ~ 16808650 (+) | False | cfap70 |
| XM_026916116.2 | mRNA | downstream | 166330 | 16779776 ~ 16808650 (+) | False | cfap70 |
| XM_034310078.1 | mRNA | downstream | 166330 | 16779776 ~ 16808650 (+) | False | cfap70 |
| XM_034309870.1 | mRNA | downstream | 195429 | 16808875 ~ 16819268 (+) | False | hmox2b |
| TU251142 | other | upstream | 466813 | 16140330 ~ 16145384 (+) | False | LOC113527983 |
| TU251011 | other | upstream | 643438 | 15918217 ~ 15968759 (+) | True | G211913 |
| trnar-ucu_8 | other | upstream | 798866 | 15813242 ~ 15813331 (+) | True | trnar-ucu_8 |
| XR_004579399.1 | other | upstream | 3119347 | 13475828 ~ 13492850 (+) | False | zgc:158403 |
| XR_003402925.2 | other | upstream | 4423608 | 12158706 ~ 12188589 (+) | False | arhgap17b |
| TU251743 | other | downstream | 473845 | 17087291 ~ 17109275 (+) | False | srl |
| XR_004579361.1 | other | downstream | 1570573 | 18184019 ~ 18341937 (+) | True | LOC113528485 |
| TU252614 | other | downstream | 2301280 | 18914726 ~ 18919872 (+) | True | smim22 |
| TU252615 | other | downstream | 2301280 | 18914726 ~ 18919872 (+) | False | smim22 |
| TU252829 | other | downstream | 2530628 | 19144074 ~ 19145240 (+) | True | G213491 |
