RNA id: TU251459


Basic Information

Item Value
RNA id TU251459
length 2304
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G212319
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16478891 ~ 16497232 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagagagagagagagagagagatagacagagaaacaaaatgtaaaactgaATTAACTAAATGATGATAGCTATTTTAAAATTTGGCAAGAaacataacaaacaaaaaaccctaaCACTTTAACatctacacaaacaaacaaaaagcaaaaaaacctTTATTGTAGCTTTACCATGTACAATGTATACAATAATTTGTCAAAAACAACCTCAGAAAACACCCTTATTGTAGCTTATGTGCTCAAAGCTCCAGAATATGAGCTTTGGAGAAAATGCCTTTCCAATTAAATGCTGGTGTCCAAACATGGCTGTGATATAAAACTGGTGTGACAGTTATGTTCCCCTTGGTCACACTCCAATACATATCAACTTTCGAACTTTgaacatcacacatcacacacacccctccaaTCCCATATTCAGAGTGTCATGGTACCACGGAGTTAATGGATTGCTTTTGACAGCACTgcatgtgagtatgtgtgttgTTCATGTCCATTTCAGAgttatttacactgaaatggTTCAACAGAGCAATGacatgaaaattaatattatgtAAACTGTACACCATCAAGCAGGTAGACTGATTACTTATTTAGCATGCTGTATTCAGTACAGTTTCATATATCagcaaaaactgaaagaagtatgatacaatataaataaaaattcaacgcacccctgttaaaattgcaggtttttgtgacgtaaaaaatgaaaccaagataaatcctgtcagaactttttccacccacaatgtgaaattacaatgtacaaaaattaagtgaaaaactatcagaaacattttagtgaAAAACTATCAGaaaaatagggggaaaaaatgacaataacctggttgcataagtgtacatATCCTTTtgtaattggggatgtggctgtgttcagaatgaaccaatcacgttCAGTCTCATgtccaaaagtaattatcatacagctgtcatcagttaaataattctgattaaccccaaataaagaccagctcaaatcaatcaggagaggggtataaaagaatttccagggtatggtgttcttttggtgatgcgcttttttttgcaccaaacatatcaccaaaagaacaccatacccttGGTGCAGCAttgtggtggcagcatcatgctttagggctgggGCTCTTATCAaagtggagggaatcatgaatagctataAATACCAgccgattttagtgcaaaaccttcaggtgtctgctagtgggctgaagtgggctgtgcacaggagatgccctcacaatttgatggatctagaatgtttttgcaagcaagagtgggaaaatattgccacgctgatagactcttatccaaaaagataagagtggtgtaataaaatcaaaaggtgcttcaacaaagtatttgtttaggggtgtgcacacttataaGTTTTTAAAGtataagttttttatttttccttttttccctaaaaaaatttctgattgtttttccaatttatttgtttactttgcaatttcacattaaagatgggaaaagatctgaaatgatttatcataTCTTCAcaaaaaaacctgccattttaacaggggtgtgtagaatttttatttccatggtgtatttacattttatattgtggtGTCTAAAATATTGTCAGTAAGCTGTGGCCTGGCAGCTTTACTGATACAGCCCAGTTGTTTCAGAAATTATTAGGAATGATTTCTTTTCTTGAAAACTGGATGCCTCCCTccaattaaacaaacacacacacacagtggggtccaaaagtctgagaccattAGTGAAAATGcatctattttgcattcttttgcatttaatacaacaattttcattacgaATTATATTATtcacaacaacttgagtgaaaagtagaatctctgaaatatttacatgaattactttttgctttaatgaaggtgtgcactcgagctggcatgaaCTCAACACGTTTATATTCACACTCAAAAGCTGAAATGCGGACTTTCAGGTTCAATTTGGGTTTTTTCATGTTCCAAATTGGGTGAATCGTGTAGGAATTATAGCTCTTTTTTAAACGTGGTCCCCCTCTGTGTTTACTCTGCTTATTGACacagatacgcctacctcctggagggtgtttTTGACCTgcccaactgttgtgaagggtttttcctTTACTGGAAACAGTTGTTGTGTGTGGTATttcaggccttttgatgttccTGAGGTCACCAGTGCATTCTTCTGTTTTAAGAATTTCCcaaataatttgtaatttgggtttgttttgattttttttagcctaatgatggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402922.2 lncRNA downstream 23044 16453560 ~ 16455847 (-) True LOC113528275
TU251176 lncRNA downstream 325321 16151738 ~ 16153570 (-) False LOC113528178
TU251177 lncRNA downstream 325377 16151105 ~ 16153514 (-) False LOC113528178
TU251126 lncRNA downstream 438492 16039756 ~ 16040399 (-) True G212018
TU251124 lncRNA downstream 441574 16037116 ~ 16037317 (-) True G212016
TU251473 lncRNA upstream 75888 16573120 ~ 16573567 (-) False LOC113528039
TU251546 lncRNA upstream 183952 16681184 ~ 16690337 (-) True G212395
TU251514 lncRNA upstream 264000 16761232 ~ 16764671 (-) True LOC113527915
TU251619 lncRNA upstream 334736 16831968 ~ 16832219 (-) True G212463
TU251855 lncRNA upstream 681296 17178528 ~ 17179748 (-) True G212626
XM_026917098.2 mRNA downstream 148352 16326885 ~ 16330539 (-) True sox8a
XM_026916252.2 mRNA downstream 251449 16225651 ~ 16227442 (-) True LOC113528022
XM_034310215.1 mRNA downstream 274900 16151075 ~ 16203991 (-) False LOC113528178
XM_026916944.2 mRNA upstream 3889 16501121 ~ 16537254 (-) True LOC113528411
XM_026916166.2 mRNA upstream 41149 16538381 ~ 16545640 (-) True LOC113527963
XM_026916292.2 mRNA upstream 75313 16572545 ~ 16598688 (-) True LOC113528039
XM_026916293.2 mRNA upstream 117859 16615091 ~ 16634737 (-) True LOC113528041
XM_034310191.1 mRNA upstream 173913 16671145 ~ 16688599 (-) True LOC117595684
XR_003402969.1 other downstream 1006979 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 1788759 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 1957916 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 1988116 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 2449250 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 795619 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 795619 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 795619 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 795619 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 795619 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile