RNA id: XM_026916082.2


Basic Information

Item Value
RNA id XM_026916082.2
length 2916
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC113527915
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16761232 ~ 16765341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACGGCTGCAGGGAGCCCTGAAAAAGCATGAGTGAGACACAGCTTTTGAATGGTTAACTCCCACCCTCCCTTCCTCTTTCCAGCTCTCCTTTTGATCCCCATTCCTCTGCTCTTGTATTCAACGTCACATTGTGGCTTCAGCCAATCACTTCCACTGTCCAGCCCCTTCACTGCTTCTTTACTCCACCCCCTGCCTTTGGCACATTATATACCCACACGCAGTTCAGCTGGGAGAGTGTTCAACATGCTGCTGGTGATTCACAGTGCAGACTATTGTAAgacagcagagaaagagaggatgaCTGCGCAGGGACTTCGGACCTTTTTTTGCTGGTCATGTTCATCTTGCACATAGTTTCACATCGCCCTGTTTGGATCTAGGCTTCATCTCTTCTCAAACCAGTACTGGATTTGGAGTACAGTAGAGGAAGTTTCCACCTGGCCTCCAACAGACTCACTggcttttaatttttaagatgGGCTGTACCACGGGGCACCTGGCATGCCAGCCCCAGCCTTTTTCAAGCCCCAACCAGGAGGGACAGATTCAGGAGGGGGCAGCCAAAGTCCCAGAGGTCCTGTCCTCTTTAGAGAGGCTTTCTCAGGCCACAGGGGGCATGGAGAAATCCTGGTATCGCTGCATCTTTCCCTTCGGAATCATCTCACTGGTGATTGGTATAGCTGGCACAGGCGTGACCTGCACCTACAATGACCTCCCTCAGACCAAGGTGGTGTCAGTCGTCTTGCTGATTGCTGGGCTCGTCCTGGTGGTAATGGCTACTGCCTGTTGGACAGTACATAAGAAGAAAcgcaggaaaaagaaagagggaggcCCCTTTACCACTGAACAGTGTCCCCTGTGAGGAGAGACTAGAAGGAGGAAGACACTTTTGAATGAACACGGGGAGTTGTGATGCCACCTTTGTTTAGCATTTCTTTTTGCCAAACTTCAGTCCATGTGTTCACTCAGGTAGCAGCAGTGTGAACATGCAAATAGGACAGATGGACAGTGTATTCAGGACACCCCTAGGGAGCAACAGAACCCACTGGACAAGTATGAGGGTTCATACAGATGGTTTACTGCCACTCAGCAAGTGTCTAGTGTCAAAACAACTCCAGAGCCACATGCACATTTGAGACACTTAACGCTTGGACCGTAATACCAAGCCACTGCTGGAGTCAGTGCTGCCGTCAACACAGCCGTCAGTCCCCCGCATTCCTGCTCTTGGGGCCAAATGGCTCCCCAAGGCTAGCAAAGAAGTGATCCAGAGAGGGCAACCAGACACCGCGACGAAAAGCAGAAGTGCAACCCCGTAATCGTCGCACGTCATTCTCCTGTCCTGTGACACTACAGCAATGTGTGAGCTTTTTTACGCAATGGGAGAGTGGAACCTGAGCTGAGCCTCAGCTAGTCCTTACTGGCGAGAGAGGGCATGAGCAGGAAAcgctgcctgtgtgtgtgcgtgcctgtgtgtgtgtgtgtgtgtgtgctgcaggaaGATGGAGAACAGCAAGCATGGTGCATGGTATTCCACTTCATTCTCTGTCTGAGTTTTCCGATGTCAGGCCGGGTGCAGTGTTAGCATATAGAGCAATGACCATGTTCCTGGAAGCCTACCTTCTTACCTAATTCGGTTCCTGTCTGCAATCAATAGAGCTGATCTGGCTAGGCAAGTAGATTGATTACCTCTAGCACATGTGTTGAGTTAGAGGTGGAACTGAATTCTATAGGAAGGTGTGCTCCTAGGACCACCAGAAGCAGTTTAGGTGAGGTTTAATCTAGAGGATTTTTAGCATTCACTGTAACTATGTGCCTCTGATCATTCTCAGGCCCTTGCAAAGCAGCATTTGAGGAAAATATACACGGAAAAGGTTTAAATATCAAACCAAAGCCCTTTTGTTTTGGGCTAGTTGGTGAAAAGGAAATCTTGTCTTCAGAGATAAGACTTCATTTCCCTGCTTCACAGAGAATGATATTACTGAAGGAGAAAAAACACAAGAGGACACCAGATGTCAACACTCACATTTAGAGTTTACTTCACTCCTGTGCCTTGAGCAAGTGGGACTCAAGTGACGTACAATACCTTCTCAACACAGTTCTCTTTGGCCTTTGCTCTTCATAAACCCATTGGCCAACATCAGCTTTTCCATTCAACCAAATCCCGAATCTCATGTCATTTCTGGCTTAAGGAGTTACTTCAGCTCCCACTCCACTACCACTCCTTTCATTCCCAGCTCATAAACCCCATTGCTCCAGTTCCATAAACTGCCATCGTTCCAGCATTTCACATCCATCCCCATGGCGGAAATAGCAATCATTACACCGTGTCTGGAATTCTTTTCATTTGAAGAACCCAGGTTGGTAGACAAATACCAGATTAATGGACTTGACAAGTTTGTCATTATGTTGGTTTTCCATAGCCATCTCTGTCTATTGTATTTCACATGGATGAAGGAAttggtttgtgaaatattgtGAGTGTTATTCAACTGTTCAGCTCTGGTCGTATACTGCGAAACCTAATTTGTTTATCCATTATGATTGTTGGAAAAAGTGTTCAAGACAAGAAAGCTGTTCCCTTGTACTGTAATAAAAAGTGAATCATTATTATTCAGGATAAAACTGATCCCATGACTTAGTTTATTTGATGATTAGAACCTCCTGGCCCATTGCTAGAGAAAAGATTCCAAGGAGAAAAATGACACTAATAATAGCATCAgtgaagagaaacagagcatAGGCAGGATATACTTAAGAAGACAGTTATTGAAGAATATCCGTTCATCAGGCTACAGTCAGATGTTTTAAGTTTTGTACAGTGGGAATTCCCTTGAGTGTCTCCATGATACTAATGGGGGATTGTAGTTGCAGTCATAAACTTTCTTTAACATTGTCATTTGcagaacaaatgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251546 lncRNA downstream 72089 16681184 ~ 16690337 (-) True G212395
TU251473 lncRNA downstream 188859 16573120 ~ 16573567 (-) False LOC113528039
TU251459 lncRNA downstream 265194 16478891 ~ 16497232 (-) True G212319
XR_003402922.2 lncRNA downstream 306579 16453560 ~ 16455847 (-) True LOC113528275
TU251176 lncRNA downstream 608856 16151738 ~ 16153570 (-) False LOC113528178
TU251619 lncRNA upstream 66627 16831968 ~ 16832219 (-) True G212463
TU251855 lncRNA upstream 413187 17178528 ~ 17179748 (-) True G212626
TU251866 lncRNA upstream 519159 17284500 ~ 17284707 (-) True G212637
TU251872 lncRNA upstream 527019 17292360 ~ 17292723 (-) True G212643
TU251856 lncRNA upstream 527432 17292773 ~ 17296160 (-) False LOC113528519
XM_026916081.2 mRNA downstream 10358 16737941 ~ 16752068 (-) True ccnf
XM_026916431.2 mRNA downstream 25669 16691510 ~ 16736757 (-) True abca3b
XM_034310191.1 mRNA downstream 73827 16671145 ~ 16688599 (-) True LOC117595684
XM_034309987.1 mRNA downstream 84592 16671145 ~ 16677834 (-) True LOC113528100
XM_026916293.2 mRNA downstream 127689 16615091 ~ 16634737 (-) True LOC113528041
XM_034310079.1 mRNA upstream 4957 16770298 ~ 16779653 (-) True LOC113527928
XM_026916255.2 mRNA upstream 54899 16820240 ~ 16829084 (-) True dnaja3a
XM_026917290.2 mRNA upstream 144572 16909913 ~ 16931628 (-) True vasnb
XM_026917289.2 mRNA upstream 209380 16974721 ~ 17038944 (-) True glis2b
XM_026916073.2 mRNA upstream 415655 17180996 ~ 17277356 (-) True crebbpb
XR_003402969.1 other downstream 1290514 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 2072294 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 2241451 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 2271651 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 2732785 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 527510 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 527510 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 527510 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 527510 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 527510 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile