RNA id: TU251605


Basic Information

Item Value
RNA id TU251605
length 3540
lncRNA type intronic
GC content 0.38
exon number 2
gene id G212449
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16923805 ~ 16927369 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgcacttAAGTGTGTGAATACACTCTAAGGCTTAGCCTAAAACAAACATGAGCAGGATGTCACTCTGAGTTGTATTTTAAGGCAGGGCTTCTGCAGCTTTGATGTTAAAAGCTAAACCTAAGGTTTGCTAAGCTTAAGCTTCAAGAGACACAGACTGTCCATATACAACGACACAAATTTATTACTGCCTGCACCAGGGGCTACATTCCTATAAatacgtgtgcgtgtgtgtgtctttgttagATACACCCTCTATAACTGCATTATATGGTCTTCGCTTTCTTTTTCACCTGCTGGTCTGTTGTGTCAGTTAAAGGGCTTGGAAGAGTCATTGGGcaattagtgtgtttagtgttgtgtgttctggCTTGAGGCTGTGGTCTGCTGCCTCCTGGCTGAGAATCGTGAGGAAGCATTATTCCTTAGCTTTACGGCCCTTGTAAGACCTGAGGTAATACAACAGTGGACTTCACAAGCACGTCCACACAGACTACCACAGGTGTAGCAGCATGCCTGACCAGGCCATTAAACAATCCCTTGCACATCTCACTGTTACACCAAGGCACCAGTGACTATTgctttttttacacacacatacaggcatTGTATTTTCACTGCTGATGCCTGCGCTGCTgcactataaactgttaaatccTCCATCATCATGTTCTTTCACAACATGTATTAATCACTTCTCCCAGGCACTCTCCATTCTCCCCGATAGTCACATATGTGACACATTCTGCTTCATTTAactctttttaatctgttttacCAGATCCCAGTCACATTTGCAAGAGCCTTATTGAGACAGGATGTGTTGTGGTTTTTACACAAGCGACTAAAAACCAGTTGTGTGGTTCTGCATAAGTTTTAATCACAATTCCTAAAATTTAAAAGGCACAGCAAGTTCTTCGTTTGTACAACACTTTGCAAAGGTTGCCTCTCAGGTACACAGTAGCACTGATTGAATCAAACGAGTTTATCTTCTCCAGAGATACCCTTTATTGCTTAAATTACTACTGAggttcatgtaaaaaaaaaaaaaactcaccagGGTATATGAATCTGTTTCTCTTCCCGtctttcttccctctctctctcgtcacTTGTTCTCCCAGAGGCCCGCTGCTTTTCTTTAAGTCCTCTGCTGCCTctggaagagaaagaggaaaacgGTGGTTAATAAGAGAccagcatgtgtgtatgtgtgtctcagtcattgttgaagatgtgacaacATTCATACAGGCctgctgtgtgtgatttttgtttacCCTCTCTCTAtaataaatctataataaataaaactctctATAATTATTTACCCTTTCTCCATAATAAACCATGTGATGGCAAAGCAGATATGAGAAGTAACAGGAGTATTTGCtaaaactatattttttattttataaggaACACAGCAGCatgaaaatctgttttttttttttagtagttttaAATTCGGTgctcatatgattttttttttctgttggaaCAGCTATGGTGATAAAATTTAGTTTCAGTTTgcatctttaaatctttaagcATTTATATGTAATTGTGTAAAGGAGGAAGTGAGATTCCAAAGAATTCAGGGGAACAGTCGAGTGTTTTGGCTGCCAACAAATATTACGttacacacaaagacaaacaagTACACACAGCATTCAGCCTGGCATGAAAGGTGACAGTTTTCTGATCTGTCAACaccttgtgtgagtgtgtgtggtgtgttgctGTCAAATTCCTGCATAGCATACTTGAGAATTATATGTCAGAGAAGGTAACAATGTCTACTTTGAGgtagttggtgtgtgtgtctgcatgtgcgTGCGTATGTGTGCTGTTTCTGTAATGCCTACGGCAGTTCAGACACTGAGTAAGTTGACACATATGCACAGAGTAACGTATGTGGAGTAATTAGAAAACAGAGACAACAGCTACAATAAAGCGTGTCCTCATTCGAAGCCCAGAAGGATAGCatacacatgcgcgcacacacacacactgtttttatgtctttttttggaatctaaaatgtacCAACGTAGATTCATCAAATATTTCTCAAAAAGCATTCATGCTTACATGCGTTCTTATTCCCTAGCAGAAATGCCACACAgagaatttgtttttaatatctaAAGCATTGACTCTTCAGACCCTGTGTAACAATTACAATTGCTGAAACCACTTCTGGAGGTGAGAGACACATTTTAACCAGATGTTATACAAGTGTCAATGTGTCTGTTTCTCCAAGCCACATCTGACACCAAAACTTCCCAACACATTACATCATAATCCATGACTATCATTAAGGAGATTAAAATCAGCATGCAAAAATGCAGATTTTGCTgatgctgccttttttttgaaaacaaGGAAAAGCACGGGAAGCTAGAATGTAATAGattgatttgcatattaatgcatGATACAGCAATCAGATATTAATCTGGCTAACCAGAGACATTTGACTACATGTGTAAATGCATGTTGTTAATTTCTTATCAGGATACAAGACACATGAGGTGTAAATGGTGTTGCTATTCACCTGTACAAGTGCAATATTTCACTCCAGTTTTAATGTAGGTGTTTGGTATGGTTGGTATGGGTGGAAATTTTTTGGAGatatttatctattatttatttactattaataGACATTTTAAACCTTGCTGTCATTTACAAGCACATTATTTGATAATAGCTGTATTCTAGTATAACATGACCTTCACATGTGCAAATCCTGAAACTAGTTTTCTAATCACACCTCTTACTAAAATACACTCCAAACTTGTAAAACAACTTACACAAAAATTCTATCCTAGGCTTGACAGATATATAGGCTGCATGTAGTGCAGCTCTTGtgctcttcctctttctcttgctcCCTCTCTGCACCGGACACGATGGGCTGAGAATACACATTTTTTGCTGATCTGGGACCTGTGAGTTTTGGGTTGTGAGTTGGTTTTGTATCAGTGTTAACTCATTAAACTCTCAgcttacttttaattttttcatgaATTATGAATTCAGCAATAAGGACAGCTGTGTACGTGTGGACATTCCTTACTCTCCTGGGAGTTTATAGGGTTAAAGTGTGCCACTCAAAAGCTGGGAttgttctctctgattcatacCCTGTTGTTCAGAGCTCATCTGCTGACAAGATGTCCAAATGAAAGACAAACACAGCTCCTGAGCCTGTCCTGCTGAAGATGCCTCACAAAAACCATGGAAAAGTAgtaaaaaatcacagacaatACCATAGTCTTTTACTTGTACTTTtactgaggaaaaataaaaataaaactcttatGTTTTCACTGATGTGTATTTTaagtaagtaattaattaattattttaactaattaaaattCTTCAATTATTGCATGACCCTAAAAATCACAATCAGGGATTTGTAAAACTTTTGTACAATGAATCAAATTACAGGGTTTTTCATATGTCAGTGTATACAAAAATCTATATTAGAGATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251601 lncRNA upstream 9232 16842948 ~ 16914573 (+) True G212445
TU251594 lncRNA upstream 113055 16810311 ~ 16810750 (+) True G212441
TU251563 lncRNA upstream 153677 16769928 ~ 16770128 (+) True G212412
TU251395 lncRNA upstream 158713 16761152 ~ 16765092 (+) True G212258
TU251394 lncRNA upstream 158713 16761214 ~ 16765092 (+) False G212258
TU251703 lncRNA downstream 125009 17052378 ~ 17055807 (+) True G212541
TU251750 lncRNA downstream 182867 17110236 ~ 17113156 (+) False srl
TU251769 lncRNA downstream 252425 17179794 ~ 17180253 (+) True G212571
XR_004579348.1 lncRNA downstream 349285 17276654 ~ 17285842 (+) True LOC117598773
TU251783 lncRNA downstream 356914 17284283 ~ 17284486 (+) True G212582
XM_034309870.1 mRNA upstream 104537 16808875 ~ 16819268 (+) False hmox2b
XM_026916254.2 mRNA upstream 104537 16809113 ~ 16819268 (+) True hmox2b
XM_026916118.2 mRNA upstream 115155 16779776 ~ 16808650 (+) False cfap70
XM_026917291.2 mRNA downstream 39672 16967041 ~ 16971767 (+) False LOC113528175
XM_034310192.1 mRNA downstream 68486 16995855 ~ 16997652 (+) True LOC113528633
XM_034309796.1 mRNA downstream 69997 16997366 ~ 16998694 (+) True LOC117595691
XM_026917074.2 mRNA downstream 139868 17067237 ~ 17085755 (+) True tfap4
XM_026917225.2 mRNA downstream 159915 17087284 ~ 17112770 (+) True srl
TU251142 other upstream 778421 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 955046 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 1110474 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 3430955 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 4735216 12158706 ~ 12188589 (+) False arhgap17b
TU251743 other downstream 159922 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 1256650 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 1987357 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 1987357 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 2216705 19144074 ~ 19145240 (+) True G213491

Expression Profile