RNA id: TU251769


Basic Information

Item Value
RNA id TU251769
length 460
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G212571
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17179794 ~ 17180253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaacgaaaggatgccacattgtttgatggaaatgaaaattatcaatctacagagggctgaattcaaagacacccaaaaatcaagtgaaaaaagtgaactAGCAGGctaactcaaaatggtactcggTATTTTGTATGACCCCCACGtgcctccaaattctccagatctctaTCTGaatgagcatctgtgggatgtgccgGACAAACAAGagtccacaagacctctgaaggtgtactgtggtatctggcaccaagatgttagcagcagatcttttAAGTCCTGGTACGTTGCGAGATGGGGCCTctatggattggacttgtttgaatttggaggccaagttaacaccttgaactctttgtcatgttcctcaaaccattcctgaacattttttgcagtgtgacagggcACATTGTCCTgttgaaagaggccactgccattagggaagaCTGActaagtatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251750 lncRNA upstream 66638 17110236 ~ 17113156 (+) False srl
TU251703 lncRNA upstream 123987 17052378 ~ 17055807 (+) True G212541
TU251602 lncRNA upstream 251812 16869758 ~ 16927982 (+) True G212446
TU251605 lncRNA upstream 252425 16923805 ~ 16927369 (+) True G212449
TU251601 lncRNA upstream 265221 16842948 ~ 16914573 (+) True G212445
XR_004579348.1 lncRNA downstream 96401 17276654 ~ 17285842 (+) True LOC117598773
TU251783 lncRNA downstream 104030 17284283 ~ 17284486 (+) True G212582
TU251790 lncRNA downstream 116155 17296408 ~ 17296874 (+) True G212589
TU251893 lncRNA downstream 204711 17384964 ~ 17385177 (+) True G212662
TU251986 lncRNA downstream 481702 17661955 ~ 17662194 (+) True G212728
XM_026917225.2 mRNA upstream 67024 17087284 ~ 17112770 (+) True srl
XM_026917226.2 mRNA upstream 67024 17087285 ~ 17112770 (+) False srl
XM_026917074.2 mRNA upstream 94039 17067237 ~ 17085755 (+) True tfap4
XM_034309796.1 mRNA upstream 181100 16997366 ~ 16998694 (+) True LOC117595691
XM_034310192.1 mRNA upstream 182142 16995855 ~ 16997652 (+) True LOC113528633
XM_026916268.2 mRNA downstream 139489 17319742 ~ 17342075 (+) True trap1
XM_026916309.2 mRNA downstream 518420 17698673 ~ 17733006 (+) False cenpx
XM_026916308.2 mRNA downstream 518420 17698673 ~ 17730565 (+) True cenpx
XM_026916307.2 mRNA downstream 518420 17698673 ~ 17722261 (+) False cenpx
XM_026916310.2 mRNA downstream 518420 17698673 ~ 17702742 (+) False cenpx
TU251743 other upstream 70519 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 1034410 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 1211035 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 1366463 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 3686944 13475828 ~ 13492850 (+) False zgc:158403
XR_004579361.1 other downstream 1003766 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 1734473 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 1734473 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 1963821 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 2121102 19301355 ~ 19313218 (+) True gng13b

Expression Profile