RNA id: TU251783



Basic Information


Item Value
RNA id TU251783
length 204
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G212582
representative True

Chromosome Information


Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17284283 ~ 17284486 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ctgaccatcacatccataggATGGCCTTCCCCAACCTGTTGCCACAAaaatggaagcacacaattatataggatgtctttgtatgttttttgtatttcccttcactggatttaaggggcccaaacaggttaaaacatcacatcatacccctatgtgctttttgaacatcccatccAGATTTAGCCCTttgatgttataataacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251769 lncRNA upstream 104030 17179794 ~ 17180253 (+) True G212571
TU251750 lncRNA upstream 171127 17110236 ~ 17113156 (+) False srl
TU251703 lncRNA upstream 228476 17052378 ~ 17055807 (+) True G212541
TU251602 lncRNA upstream 356301 16869758 ~ 16927982 (+) True G212446
TU251790 lncRNA downstream 11922 17296408 ~ 17296874 (+) True G212589
TU251893 lncRNA downstream 100478 17384964 ~ 17385177 (+) True G212662
TU251986 lncRNA downstream 377469 17661955 ~ 17662194 (+) True G212728
TU251987 lncRNA downstream 379249 17663735 ~ 17663960 (+) True G212729
TU251980 lncRNA downstream 407605 17692091 ~ 17694083 (+) True G212722
XM_026917225.2 mRNA upstream 171513 17087284 ~ 17112770 (+) True srl
XM_026917226.2 mRNA upstream 171513 17087285 ~ 17112770 (+) False srl
XM_026917074.2 mRNA upstream 198528 17067237 ~ 17085755 (+) True tfap4
XM_034309796.1 mRNA upstream 285589 16997366 ~ 16998694 (+) True LOC117595691
XM_034310192.1 mRNA upstream 286631 16995855 ~ 16997652 (+) True LOC113528633
XM_026916268.2 mRNA downstream 35256 17319742 ~ 17342075 (+) True trap1
XM_026916309.2 mRNA downstream 414187 17698673 ~ 17733006 (+) False cenpx
XM_026916308.2 mRNA downstream 414187 17698673 ~ 17730565 (+) True cenpx
XM_026916307.2 mRNA downstream 414187 17698673 ~ 17722261 (+) False cenpx
XM_026916310.2 mRNA downstream 414187 17698673 ~ 17702742 (+) False cenpx
TU251743 other upstream 175008 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 1138899 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 1315524 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 1470952 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 3791433 13475828 ~ 13492850 (+) False zgc:158403
XR_004579361.1 other downstream 899533 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 1630240 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 1630240 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 1859588 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 2016869 19301355 ~ 19313218 (+) True gng13b

Expression Profile