RNA id: XR_004579443.1


Basic Information

Item Value
RNA id XR_004579443.1
length 3780
RNA type misc_RNA
GC content 0.40
exon number 4
gene id LOC113528519
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17292773 ~ 17319719 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGCCAGTACACATCATATTTCAGATGCTCGTGTGTAAATCTACTTAAATGTTAACCATATTCTAGAAAAAGATTGTGTATCATCCTAGGACAGTGGCATTTTTAAAGGTGGTAAGGATACAGGTGAGGTCTTTTAGGGCATATTTTGCGACTCAGGGTTGTAACTCGTAATTCCCGACCTCCGAtcaggaaaagccaaagaaaacgccCACTCCTCCAAGCCTACAAGTTCCTCCGAGTTAAGCCAGTGACGTCATATCAACATGGTACAGCATCGGCACTAAAAAAGTTGGAGGTGCAGAGACCTGTTCAAACCTTTGCCAGTCCCACATTCAGCTCATTCCTGGACTTGCTTGTGGGTTTCTTAGTTCTCCTGGCTCTCTCTGGCCTGCTTTCTTTGGCTTCTGGTTACCCAGCAGCTATTGCCCATCCCTGCCCTCATCATGGCTGTGGTGACTGCCATGCTGGAATGCTTGACACTTGCACTGGCTattcaACCCTCCGTCGAGTCTATACTTCCACTCTTCAAGAGTTGCACCTGGACTTTGCTCTGGTTCATCTCTGCCTGGGTTCCTTGCCATCTCATTGGGACAGTGCTAGTGTCTTTACCAGCCTTGTCCATCTTTTCCCACATCACCTGTGATATGCAGCTGTCCACACAGACAAGACTGCACTGGATCAGGCTGACCTAGGAGATGTCTCCACTTCCCTCCTTATCGATATTTGATGCACATACCTCCTTGGGGGTGAACTGTGAGTTCTTCCTGTTAATCTATCAAGGCTTTTACTTCTCCTCATCTTAAGCAGTCCTCTGCATAGCCTGGTACAATCTAAATTTATTAGACAGACATACTGGTGCCTGTCTAGGCGATGACATGTGTTTGTTCCTCTCTTATCCTGATAGTGAAGTGCACTGCTCAGTTTTAAGTCCTAGGAATTGAGGCCGTTTGATAacaataaactgttttttttctcatgtcaAGTTGCCCTTCACAAGTAGGCTTCAGTTCAGTGTTCCTTTTGAACACAAAATTGAGACAAGACAAAGCAATGTCAAACATAGAATCAAGCTGAAGGTCTGTGAGCCAAATACGGCCTGTTGCCTCTTTCCTTTAGTCCACataaacctgaaaaaataacacactgtCTAGAATTCTGATCATAGCTAAGCGATCGACACTGTACAGCGCACAAGAGCTCACATCACTGTGCTGAAACACTGCTTAAAATCAGTGCCTTTTCTGCTGCATATGACGTAGGTCATACTCACAACTAAAACAATTCAGAATCACATTGGCAGGGGGCAGTGGTGTAAACAGGGCTTACTTTTGGTGTGATAAGgacatatacaaaataaaataatgaacgcGTGATCATTTCAGTCTACTGTCAAACAATCTAGCCATTTTAATAATGTTGCTgtaaaatacctttatgacagctccactaaaattattaaaataatgtcaaTAATAGGGGAACATTATGTCTTAtcttataaatcctgatctacttttcttttcctcttactTCAGTAAACCTCCAGTAGACTACTTCACTGGCTTTCACATTGGTATCTCTGTGTATAGTGTAGCTATCTAGCTAGTATCTTTCAGATGTGTATATGCAGGGAAAATCATGATCCCAGTTGGTTAAACCTGTTTCTCACCATATAAGCTATTAGCAAAAAAGGaatgcattcatttaaaaaacattaatcacTATAATAACTGTGATCATGTAATAGTGCATATACTTAAACAGTTTCTGTTAGCTCCTCTTTATCCTAGAAGCTTTTTATTCTAATTTCAGAACCTAGAATTATGGCCTTTCAGAATCTTACAAAACACCCCTGACACCCTTGGCTtagcttttaaaacaaaactaaacaaaacaaacaaacaaaaaaaacaacattaacatGTCAACAGGATAGTATTGTGGTACAGGAACACTATCCCACTGTCCTTATGAATGGTTGTGCAAAAAAattagaagtaaaataaaatttaaaaaaaacatagggCAGGGAGCCTACACTTCTTCATTATGATACAAACATTAGACTTCATTGGCAAACATGATTGTAAAAGATGCCCATTGGACATTTCAACTGCACCCCCAATTAAGACAGGGCCTGAACCACACTACCAGAATAGTGACAAAAAATGTCTTCAGCCCACACAAGCTTCCTTTTCTTGACAGATGACGATAATAGGCTTAACAATATTATATCTGCAATTACATCCCCTGATTTTTGTAAGAGttgacatataaacatttaaaagaattttgtttGCTCCAGTTTATGCCTAGCACTACATGTTTAAAGTAGCCAAGTGACACACCAGAAGAGCACAATGTAGGTTAGCTGGTATGCATAATATTTCACGGTACAAAATGCTTCAACAGCCAACACTCTTAGCACCTTTAGTGGCCCACATTGCCTTGAAAAATCAACTCTATGGTCAAGTGACAACACAGTTGTAtactgttgtgctgttatatgagTTAGGGGGCCCTATTCAGacagggtgaaaaaaaaacatgtgggCCATCATGAACAATGCCTTTAGGTAACTGCcacgtttatttttatttattgttttagaaGTAGGGGGTCCTTATTTCTTTCTGGGCACCTCTAAGAGGCCCCTTGGGGGTTCTAATGGAGCCACTGTTTTGTACGTTCTTTTTGGATTTCTCCTCACAGAGTTGGGGCGCTCATATGGAACGGCGTCAGTAACAGAGGATAGAGCCCCAAAGTCCTACAGAAAACTAAAGTGATAAACACTCATTTGAAGGTGTTATGATGGTTTCTTTCTTGTGATATCTTCAAAGTTAATGTGTATGctatttcttcagtttttcaggGAGTCTTCTGGACCTTTGACTCTGGGTAGTTAATAAAAGCAACTTTGAGGCTATTGCTTTGCTGCCCTGTGACTCCTTGAGCACCTGGGCCTGCACCAACAAACACTCAACGGTCATAGAcaatgagatcacattttttccatcaTTCCAAGTGAAGtgcttgacctgtatttgcatgacaATTATGCTGCTGACAAATTATTGGCTGactgataattgcatgaatgagcaggtgtataggtgttcctattaaagtgtataattagcaaatgttacaataatgtttgagctgtgtttttaaatgtcGTTTCCCTGTGTTTGTATTCAGAGATCATTAAATCCCTGTTTGGAATGAatgcctgcagccacactggccctttgtggataagattgaagaccccttCTCTACACCTTTACCCTCTGTGGCTTGTCAGAGGAGAACCCAACATTTGGACAGACCCTCCCAATCTTCTCCAAACATGTGAACCATTTTAAAACAGGAGAACAGGACACACTGCCAccttaaagaaaaaagtgtggGCTGACATTTCCTAGCACTGTCAAGTATGTAAAATGTATACACATATTTTCTTAAAAAGGAATTTTGGCAGTGGGGGCAAGGTCGAGTGTTGGCCgcagacagagaggaggcaGGGGAACCAGCAGGTAACACGTGATGATTATCACCTGTGCCTTATTACTGATATTACTGCTGCTtatgtgtttctctgtgcttTCAGGGACATAGCTGTCCTTAAAAGTGGCATAgctggcaacacacacacaaataaacacacacacggagcatgATCAAATCATATTGGCTGTATGAAGACAAACTGTGTAAATGCAACTCAATTCATTCACATTGAAGcaatgtacacatttgaattaaataagttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251872 lncRNA downstream 128 17292360 ~ 17292723 (-) True G212643
TU251866 lncRNA downstream 8144 17284500 ~ 17284707 (-) True G212637
TU251855 lncRNA downstream 113103 17178528 ~ 17179748 (-) True G212626
TU251619 lncRNA downstream 460632 16831968 ~ 16832219 (-) True G212463
TU251514 lncRNA downstream 528180 16761232 ~ 16764671 (-) True LOC113527915
TU251883 lncRNA upstream 20868 17340587 ~ 17342051 (-) True G212654
TU251892 lncRNA upstream 64685 17384404 ~ 17384633 (-) True G212661
TU251957 lncRNA upstream 156276 17475995 ~ 17518521 (-) False LOC113528038
XR_003402929.2 lncRNA upstream 367336 17687055 ~ 17698583 (-) False LOC113528348
XR_003402927.2 lncRNA upstream 367336 17687055 ~ 17698583 (-) True LOC113528348
XM_026916073.2 mRNA downstream 15495 17180996 ~ 17277356 (-) True crebbpb
XM_026917289.2 mRNA downstream 253907 16974721 ~ 17038944 (-) True glis2b
XM_026917290.2 mRNA downstream 361223 16909913 ~ 16931628 (-) True vasnb
XM_026916255.2 mRNA downstream 463767 16820240 ~ 16829084 (-) True dnaja3a
XM_034310079.1 mRNA downstream 513198 16770298 ~ 16779653 (-) True LOC113527928
XM_034310012.1 mRNA upstream 70467 17390186 ~ 17518527 (-) False LOC113528038
XM_034310010.1 mRNA upstream 70467 17390186 ~ 17518527 (-) False LOC113528038
XM_026916286.2 mRNA upstream 70467 17390186 ~ 17518527 (-) False LOC113528038
XM_026916291.2 mRNA upstream 70467 17390186 ~ 17518527 (-) False LOC113528038
XM_026916285.2 mRNA upstream 70467 17390186 ~ 17518527 (-) False LOC113528038
XR_003402969.1 other downstream 1820939 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 2602719 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 2771876 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 2802076 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 3263210 14020248 ~ 14029641 (-) False pecam1
TU251953 other upstream 66492 17386211 ~ 17425901 (-) True G212700
TU252009 other upstream 355108 17674827 ~ 17675284 (-) True G212750
TU252076 other upstream 508448 17828167 ~ 17853639 (-) True tsen54
TU252457 other upstream 1056358 18376077 ~ 18377363 (-) False LOC117598999
trnat-cgu_6 other upstream 1756550 19076269 ~ 19076340 (-) True trnat-cgu_6

Expression Profile