RNA id: XM_026916285.2


Basic Information

Item Value
RNA id XM_026916285.2
length 5693
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC113528038
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17390186 ~ 17518527 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAAGGACGAAGACACGGTTGGAATTTGTGTGGCGAAGTTGCAGTGACTCTTTAAGGAGGGTATTATGTTTTTGTCGatgaaatatacagaatatgCAATTAAAAGATTGCATTTTGCATCGTATTAAGTTCCAGTGTCACTGCGTGCAAATAAAGTATTCTACCTAGTGCAGGGTAGACAGAGAACTATATTTGAGCTACATTACTTTTCAGCTGAAAGTGGACAGGCGACGTTCACGGCCCTTGGACCCGTTAACCTAAACGCTGGCTAACGCACTAGTACTGTCTGGAGCTGCTGAACTTATATCAAAGAAACACGCTGCCCATACAGCccattgttttattaaaccTCAAGGTTCTGGTCAACTGGTCTATGCAGTGGCACAACAATTTTTCCAGCTCTATAACCACAGCTTTAGAGTTCCCAGAATAAGACACTCAATCCGACTCCCATACTAGGCAAAACCTGAGAGATGGTCAAAAAGTAAAGGAGGTGGGAAGGAACTGGACGCAAACCAATTGCCTCTATGGTTGCTGGTGAATGcttcttcatttgtcttgacAGCTACTGATAAAGGTAACATTTGCAAAGTGAAAGGGAGAAAAGCTCTGGGACAGGTTTATAATCTATTGCTGCTGCATGGAGGAGTAACAGAGGAGTCAGACTCGTGCTGGTCACCAGCGGATTTATGCACTGCAGGGGATCATGGGAAAAGAACAGGAGCTTCTGCAGGCAATTAAGAATGGCGATGTGTCTTCCACGCAGAAACTACTGGCAAAGTTCAAAGGCAGCAGAAACAAATTATTAAGCTCAACCAAGAGACTGAATATCAACTATCAGGATCCAGAAGGATTTTCCGCACTTCACCATGCTGCTCTAACAGGGACAACAGACCTGCTTTCTCTGTTATTGGAAGCGCATGCCACTGTGGACATCAGAGACAGCAATGGAATGCGTCCGCTGCATTATGCTGCATGGCAGGGGAAAACTGATTCTGTGCTCATGTTGCTCAGAGCAGGAGCTTCTGTGAATGGAGCCTCACAGGATGGCCAGATTCCTCTACACCTTGCTGCTCAGTATGGACATTATGATGTGTCTGAGATGCTGCTGCAGCATCAATCTAACCCCTGCATTGTGAACAAAGCTAAGAAAACTCCTCTGGACCTCGCGTGTGAGTTTGGCCGGCTCAAGGTTGTCCAGCTGTTGTTGAGCAGTAACATGATTACAGCTTTACTGGAGGGAGACAGTGGGGACACTATAGATACTGCCTTCAACACTCCTCTCCACCTCGCAGCTCGCAATGGACATAAGGACATCATTCGGATTTTGCTGAAAGTAGGAATCAACATCAACAGAGTCACCAAAGCAGGTACTGCTCTCCATGAAGCTGCTCTCTATGGGAAGACAGAGGTAGTACGGCTGCTGTTGGATGCTGGAATTGACGGTAACATTCGTAACTCTTATAACCAAACAGCCCTGGACATTGTCAATCAGTTTACAACTTCTCATGCCAGCAAAGACATCAAACAGCTCTTACGAGATGCCACAGGAGTCCTTCAGGTGAGAGCTCTGAAGGACTATTGGAACCTTCATGACCCTACTGCCCTCAACATTCGTGCTGGTGATGTCATTATGGTGCTGGAGCAACACATGGATGGTCGCTGGAAGGGCCACATCCACGACAGCCAGAGAGGCACAGACCGCGTGGGCTACTTCCCACCCTCCATAGTGGAAGTCATCAGTCGTCGCTATGGGGGCACACTGTCTCGCCATTGCTCTATGCCCTGCCAGAGGCAGCAGTTGTCCAGAGCTCAACTTTCTTCCAGTCTGAGCATGAGCTCCTCTGTCACCCCTAAAACTGATGACTCATATACCCCTAAttcccatctggcaccaacccACGAAATCTGCCTAAGCACCAACCGAGGTGGCTCCCCCAGCAGCTGCACTCTGCCTTTTCTTGAGGACATCTGGGTTCTGAGGAATTCCTGTGCAGGAGACAGGAACAGTGTGGGTAGCACTGGCAGCGTTGGGAGCACACGTAGTGCCGGTAGTGGGCAGAGCACAGAAAACACCACCACCTCGAATGGCCTTCCCCAGCAAAACACCAACGCTGATGCCAGCAAACCACCTGTGTCCCTTGTTGGTGATCCAGAACAACTGGACCATCACAAACAGCCAGACCACAGTACAGGCATTCATCGAAGGCCAGTGCTTGCTGTGCCCAGAGCATTAGAGCAGAGCttctttcagcagtttgtgcgaCCACAGCAGCTGCTTGAGGGCAGGCAGGATGCTGAAGCAATCTACCAGTGGCTGTGTGAGTTTCAGCTGGAGCAGTACACTTTTAACTTCCTCAACGCAGGCTATGATGTCCCCACTATCAGCCGAATGACTCCTGAGGATCTCAATGCTATTGGTGTTACAAAGCCAGGCCACCGGAAGAAAATCTCAATGGAGATTGGAAACCTAAGTATTCCAGAGTGGCTGCCTGAATATACACCAGTGGATCTTGGTGAATGGCTCAATGCTATAGGTCTGCCTCAATACCATAAGAGGCTGCTAGACAATGGCTATGACTCCATCAATATTGTAAGAGACCTCACATGGGAGGACTTACAGGAGATTGGGATCACTAAGCTAGGTCATCAGAAGAAGATCATGCTGGCAGTAAAGAAGCTTTCTGATCTCCATAAGGCTCTCCTCCAGGCCGAGTCAGGTCAGGGCACTCTGCGCTGCAAACATCCGACTGCACTGGACCTGCTCCCTATTGACGGGGGTGACCCTACCATGCCctgcacacacaaaatgctcaCCTTCCAGGCTAGTGAGCTGAGTGCTCAGCTACAGAGTGCCATGGCAACACAGTATGCTGACCTACAGGAGGGCCTGGCTATCAAGAATGCTGTGGCTAGGTCAGTGAGCCAGGAGAGCATTGATGCTCGTTCTGGTGGTTCAGGCTGGTCACAGGAGAACCCCATCACGCCTTGCTCCCTCTCATTACCTACCACTTGTCACAGCCAGTCTCAGGACAGTCAGCTCAGCCCTGACAACAGCACTTCAAAACAGCGAAACATTCCAGAAGGCCAAGACCAGCAGCAAAAAAGGCCCATTGGTTCCTCTCCCTCATACATAATGATGGATGTCAAGCCCAAACCAGGCAGCTCTTTGGCACAGAAAGTCTTCAGCTACTTGCATGCTAACAGCGGCACAGCCACCCTGGACCACAGCTCGCCTGGAGTGCCTAAAAGGCACATGCAGAATCTCACACGCTATGCGCTGTCTGATGGTGAGCCTgaggaagaagatgatgaaCAGCTGGCGATGCCTGCCACCACTGCACTGCCATCTTACGCCACACTGAGCCGCCGACCTGGACGTGGGCAGCTCATCCGAGCCCAGTCTACTCCAGAGCAGTCAGTTAACCGTAGCCACTCATTTGCAGTCAGAACCCGACGCAAAGGtcctccccctcctccaccCAAGCGCCTCAGCTCTGTCAGCAGTAGTAGCTGCAGCACTGAGACCGCAAAATCCCCAGTCCCACCTATAGGCCAAGTGGAGACTGACAACCCTGAAAGTGTCAAAAGCATTGCACCTACTCCAGAAACAGCCATAATGGGCCCCAGGGCTAAACTCTGCCAGGAAGGCAAAACTGCCCTTTTTGGGTCTTCTGAGATTTCCAGGAGAAGGGTTGTGAGCCAGAGCGAAAATAGCATGTGTCCACAGGCTAAAGGAGATGACCGAGTTGTTAAGTCAGACTCTGAGGAGGATGAGGGTGCTAAGGATGCAGGGCTGGACAGTTCTTCTTCGCCTCAAAACAGCTCTGGAGAGTGTATCCCCTTTGCTGAGGAGGGCAACCTCACCATCAAGCAGCGGCCCAAAGCAGGCAAAGTTGACAGCACCACTGAGGCTCCTGAGAAAGCAAAGTCAGCTAAGGTGCCAGAGCTGCCAGAGTTTAAACTGAAGGAATCAGGCACAGTAAAGAGACGCCATAAGCTGAAGGAGAAGGATCAGCCACTTGACATGCCCACTGGCAGAGGAGAAAGTGAGCAGCAGTGTCTAAATGCAGTTAATCTGCACAGTGAGGTGGCAATTGCACCACCATATGTGCAACCTCTAGTTGTGCAGAAGAAGACATCTTGTGTGAAGACATCTCTCTCCCCAAAACTAGCCAGTCCTCCAAAAACTGCACATCATACTACTAATCTCCATCAGCCTGCTCCTGCAGTcacagCTGGACAACAAGGTGTCTTGCTGAGTGTGGTGCAGAATGTGGCTTTTGCAGTACCCACATCTTCAGAGACATGTTCTCTAGTAGCTGTGCCTCCAATTCAGAAGGTGACATCAGGAAAGTCTCAGGCATGTGTGGAGGCTAGTCCAGAGTCCATGCTGGTGCAGCAGAGACTGGATCAGACCAGCTCCTATCTGGAGAAGGCACTGAAGGCTGTGGAGAAAAAACTTACTTTGGAGGACATGAAAGATGGAGGGTGCAACACAGTGAAGTCTGCAGGGAATATTCTGGATGACATCGGGAACATGTTTGACGATCTGGCATACCAGCTGGACGCTATGCTTGACTGAACTTCCCTCTCAAAAGTCATACTGTAGCTCAGAAAGATGGTTGGATGTGATGTAGgagagagtttaaaaaaaaaaggtggtagGCAACGTGAGCCTGTCTACAGAACAGTTCAAACCATTGACTATTAATCTGCTTTCGTTTACTATGATATAGAACTTTGCTGCTTGGTGGGTTTACAAAGCAAAAATTAAAAGGGACGCAACATATTCTACAAGGTCTCTGAACTCAAGTTTGAACACCAGCCATTTCCTTTAACTCCATTAATGACTATTTATGCTTTATACACTAAAACACTAGTGTCCACCCTCCTGAGCATAGGCTACTGCTGTTTAGCCTGAGGCTTTTTCTACTTACCCATCTCATCATGTCCATATTAGACAGTAACAGTTACAGCTATTCCAGTTTATGTAgctaataaattttattttttttattgtttttatgtcaACAAAACGCGTACAATTTAATATGGCAGTTGGACCCAGATTAAGAGCTGTACTCAGGAGAACAATTCCACGGACAATAAACCAGAAATACTATATTCTTGCACCAAGACTTTTTGCaacttgtatgtgtgtatttaaaatgtgttttttcctaGTCAGTTCAGTTATGACTAGTTTTATATCAAATTTAGctgccattttaaaatgtacttgCCTTGGTGTCAATAAAATTTATAACATGGATTACAATTTTGTGTGTAGAAACAACAAAGGTTTTCAGTAGTAATTACTGTAAAGGGGAACACATCACCTTTTGCAACACAAAGTTTTGCCAGTGTGGAATTAGAGGGGAAGTAGATGTATAATGAATgattactatattatatacattcactatttttgaaaaataaaaatgcatattagtaaaaaaaaatgtatttaaagatgTCAGATATGTATTTTGTACACAAACAGTATATCTGATTGAGGAACTGTATGTCCtgccaaaacattttttttcttcaaatattcATATGAATTTTCCTTCTTTAACTATCAAACGTATATTGTTAAAACTAACAGTTTTGTTATGTACAGTTCTGATTATATTGGTTAGTTTTCTTTCTGGTTTTCCCCACTATTAAAGCAGTTGTATGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251892 lncRNA downstream 5553 17384404 ~ 17384633 (-) True G212661
TU251883 lncRNA downstream 48135 17340587 ~ 17342051 (-) True G212654
TU251856 lncRNA downstream 94026 17292773 ~ 17296160 (-) False LOC113528519
TU251872 lncRNA downstream 97463 17292360 ~ 17292723 (-) True G212643
TU251866 lncRNA downstream 105479 17284500 ~ 17284707 (-) True G212637
XR_003402929.2 lncRNA upstream 168528 17687055 ~ 17698583 (-) False LOC113528348
XR_003402927.2 lncRNA upstream 168528 17687055 ~ 17698583 (-) True LOC113528348
TU252000 lncRNA upstream 171539 17690066 ~ 17692026 (-) False LOC113528348
TU252002 lncRNA upstream 175699 17694226 ~ 17698587 (-) False LOC113528348
TU252004 lncRNA upstream 214599 17733126 ~ 17734153 (-) True G212745
XM_026917113.2 mRNA downstream 70467 17292851 ~ 17319719 (-) False LOC113528519
XM_026916073.2 mRNA downstream 112830 17180996 ~ 17277356 (-) True crebbpb
XM_026917289.2 mRNA downstream 351242 16974721 ~ 17038944 (-) True glis2b
XM_026917290.2 mRNA downstream 458558 16909913 ~ 16931628 (-) True vasnb
XM_026916255.2 mRNA downstream 561102 16820240 ~ 16829084 (-) True dnaja3a
XM_026917216.2 mRNA upstream 293086 17811613 ~ 17872581 (-) False tsen54
XM_034310225.1 mRNA upstream 293086 17811613 ~ 17853708 (-) False tsen54
XM_026916227.2 mRNA upstream 412182 17930709 ~ 17934416 (-) True foxj1a
XM_026916226.2 mRNA upstream 412183 17930710 ~ 17934414 (-) False foxj1a
XM_026917086.2 mRNA upstream 462486 17981013 ~ 17985888 (-) True jmjd6
XR_004579444.1 other downstream 70467 17292851 ~ 17319719 (-) False LOC113528519
TU252009 other upstream 156300 17674827 ~ 17675284 (-) True G212750
TU252076 other upstream 309640 17828167 ~ 17853639 (-) True tsen54
TU252457 other upstream 857550 18376077 ~ 18377363 (-) False LOC117598999
trnat-cgu_6 other upstream 1557742 19076269 ~ 19076340 (-) True trnat-cgu_6
TU253095 other upstream 1926462 19444989 ~ 19448334 (-) False rbbp6