RNA id: TU252140


Basic Information

Item Value
RNA id TU252140
length 274
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G212870
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17886009 ~ 17886282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGAATAACACCAAGGTTTATGATGCAGTCACGCACATTGGAAGACAGCGTACCTAACTGATTAACAATACCAGTGGATGAGACTGGTGGACCAAAgataattatttcagttttatcacTGTTCAGCTGCAAAAAAATTCATGTCCATCCAGCATTTAATGTCACTGAGACATTCAAATAGATTTTGCACCGAGCAGCTGTCGTTTGTACtaacaggaaaataaagctGTGTGTCGTCAGCATAACAATGATATGATAAGTTGTGCTTCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252066 lncRNA upstream 59659 17819418 ~ 17826350 (+) True G212804
TU252045 lncRNA upstream 104081 17781712 ~ 17781928 (+) True G212783
TU252044 lncRNA upstream 104553 17781231 ~ 17781456 (+) True G212782
TU252043 lncRNA upstream 104982 17780780 ~ 17781027 (+) True G212781
TU252040 lncRNA upstream 106828 17778915 ~ 17779181 (+) True G212778
TU252159 lncRNA downstream 12499 17898781 ~ 17898981 (+) True G212889
TU252176 lncRNA downstream 78511 17964793 ~ 18464023 (+) False G212903
TU252169 lncRNA downstream 94716 17980998 ~ 17982806 (+) True G212899
TU252175 lncRNA downstream 499530 18385812 ~ 18464023 (+) True G212903
TU252283 lncRNA downstream 523559 18409841 ~ 18410859 (+) False LOC113528171
XM_026916907.2 mRNA upstream 75519 17808272 ~ 17810490 (+) True LOC113528388
XM_026916729.2 mRNA upstream 118340 17749174 ~ 17767669 (+) True ccdc137
XM_026916308.2 mRNA upstream 155444 17698673 ~ 17730565 (+) True cenpx
XM_026916702.2 mRNA downstream 134803 18021085 ~ 18043102 (+) True mfsd11
XM_026916194.2 mRNA downstream 175755 18062037 ~ 18063661 (+) True LOC113527984
XM_034309866.1 mRNA downstream 297411 18183693 ~ 18342960 (+) False LOC113528485
XM_034309865.1 mRNA downstream 297419 18183701 ~ 18342960 (+) False LOC113528485
XM_034309862.1 mRNA downstream 297737 18184019 ~ 18342960 (+) False LOC113528485
TU251743 other upstream 776734 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 1740625 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 1917250 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 2072678 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 4393159 13475828 ~ 13492850 (+) False zgc:158403
XR_004579361.1 other downstream 297737 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 1028444 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 1028444 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 1257792 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 1415073 19301355 ~ 19313218 (+) True gng13b

Expression Profile