RNA id: TU252159


Basic Information

Item Value
RNA id TU252159
length 201
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G212889
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17898781 ~ 17898981 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcttgactaaacaaatatggttttagcctagacttaaacactgagactgtgtctgaggcccaaacactaattggaaggctgttccataactgtggggctttgtaagagataACTCTatcccctgctgtagccttcactattcgaggtaccaataAATAGCCTGttccttttgatcaaagtaggcatggcggatcataaaag

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252140 lncRNA upstream 12499 17886009 ~ 17886282 (+) True G212870
TU252066 lncRNA upstream 72431 17819418 ~ 17826350 (+) True G212804
TU252045 lncRNA upstream 116853 17781712 ~ 17781928 (+) True G212783
TU252044 lncRNA upstream 117325 17781231 ~ 17781456 (+) True G212782
TU252043 lncRNA upstream 117754 17780780 ~ 17781027 (+) True G212781
TU252176 lncRNA downstream 65812 17964793 ~ 18464023 (+) False G212903
TU252169 lncRNA downstream 82017 17980998 ~ 17982806 (+) True G212899
TU252175 lncRNA downstream 486831 18385812 ~ 18464023 (+) True G212903
TU252283 lncRNA downstream 510860 18409841 ~ 18410859 (+) False LOC113528171
TU252284 lncRNA downstream 512040 18411021 ~ 18411582 (+) False LOC113528171
XM_026916907.2 mRNA upstream 88291 17808272 ~ 17810490 (+) True LOC113528388
XM_026916729.2 mRNA upstream 131112 17749174 ~ 17767669 (+) True ccdc137
XM_026916308.2 mRNA upstream 168216 17698673 ~ 17730565 (+) True cenpx
XM_026916702.2 mRNA downstream 122104 18021085 ~ 18043102 (+) True mfsd11
XM_026916194.2 mRNA downstream 163056 18062037 ~ 18063661 (+) True LOC113527984
XM_034309866.1 mRNA downstream 284712 18183693 ~ 18342960 (+) False LOC113528485
XM_034309865.1 mRNA downstream 284720 18183701 ~ 18342960 (+) False LOC113528485
XM_034309862.1 mRNA downstream 285038 18184019 ~ 18342960 (+) False LOC113528485
TU251743 other upstream 789506 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 1753397 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 1930022 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 2085450 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 4405931 13475828 ~ 13492850 (+) False zgc:158403
XR_004579361.1 other downstream 285038 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 1015745 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 1015745 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 1245093 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 1402374 19301355 ~ 19313218 (+) True gng13b

Expression Profile