RNA id: TU252283


Basic Information

Item Value
RNA id TU252283
length 272
lncRNA type sense_over
GC content 0.46
exon number 4
gene id LOC113528171
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18409841 ~ 18415347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGGACAAAAACCGTGATTTCAGGTGCTTTAGTTCAGTTACTGTATTTTACAGATCACACGCCAGAGAAAACAATCCGAGAGAAAATACTGGATTCATACCCACGAGATTCAAAGATgagtgagaagaagagaagtAGCCAAAGAGGAACAGCTGGAACAGCTGGAGCGTGCACTCAGGACTCCACATCTGACCAGAGACTGAAGTGTTTCAGGGACATTATGGACGTCGTTCTTCATCTGAGCGATGAggaATGGAAGGCTGTGACCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252169 lncRNA upstream 427035 17980998 ~ 17982806 (+) True G212899
TU252159 lncRNA upstream 510860 17898781 ~ 17898981 (+) True G212889
TU252140 lncRNA upstream 523559 17886009 ~ 17886282 (+) True G212870
TU252066 lncRNA upstream 583491 17819418 ~ 17826350 (+) True G212804
TU252045 lncRNA upstream 627913 17781712 ~ 17781928 (+) True G212783
TU252284 lncRNA downstream 162 18411021 ~ 18411582 (+) False LOC113528171
TU252293 lncRNA downstream 14335 18425194 ~ 18426053 (+) False zgc:163143
TU252294 lncRNA downstream 14335 18425194 ~ 18427626 (+) False zgc:163143
TU252290 lncRNA downstream 14380 18425239 ~ 18427626 (+) False zgc:163143
TU252491 lncRNA downstream 106454 18517313 ~ 18565782 (+) True G213191
XM_034310284.1 mRNA upstream 41252 18360781 ~ 18368589 (+) False tac4
XM_034310283.1 mRNA upstream 41252 18367397 ~ 18368589 (+) True tac4
XM_034309863.1 mRNA upstream 66881 18184024 ~ 18342960 (+) False LOC113528485
XM_034309692.1 mRNA downstream 14320 18425179 ~ 18434528 (+) True zgc:163143
XM_034309693.1 mRNA downstream 14320 18425179 ~ 18434528 (+) False zgc:163143
XM_034309694.1 mRNA downstream 14320 18425179 ~ 18434528 (+) False zgc:163143
XM_034309691.1 mRNA downstream 14320 18425179 ~ 18434528 (+) False zgc:163143
XM_026916958.2 mRNA downstream 38427 18449286 ~ 18451161 (+) True LOC113528424
XR_004579361.1 other upstream 67904 18184019 ~ 18341937 (+) True LOC113528485
TU251743 other upstream 1300566 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 2264457 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 2441082 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 2596510 15813242 ~ 15813331 (+) True trnar-ucu_8
TU252614 other downstream 503867 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 503867 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 733215 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 890496 19301355 ~ 19313218 (+) True gng13b
TU253379 other downstream 1495343 19906202 ~ 19910165 (+) False LOC113528458

Expression Profile