RNA id: XM_034310202.1


Basic Information

Item Value
RNA id XM_034310202.1
length 3808
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC113528171
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18409841 ~ 18415347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGACAAAAACCGTGATTTCAGGTGCTTTAGTTCAGTTACTGTATTTTACAGATCACACGCCAGAGAAAACAATCCGAGAGAAAATACTGGATTCATACCCACGAGATTCAAAGATgagtgagaagaagagaagtAGCCAAAGAGGAACAGCTGGAACAGCTGGAGCGTGCACTCAGGACTCCACATCTGACCAGAGACTGAAGTGTTTCAGGGACATTATGGACGTCGTTCTTCATCTGAGCGATGAggaATGGAAGGCTGTGACCAGGGACATGAAGAAGAAGGTCACAAAGTTGGAGTTTGCGGCTCTGTGCACGAAAATCGTGACGTCAGCAGCGTCTTCTGCCATCAGACGTTTACTGACGCCTCTCATCGAAAGCTTCGGGATCGATTTGATTCTCCAGGCGaaagacaaactgaagaaaagGGAGGAGTCTAAATGGAGGAAGTGGTCTGACTCAGACGCCTCAGCTCAAAGATCGCCTACGGAGACGTCTGATTTCATCTGTCAGCTCGTTCAGAGAATCGCCACTCAGACCAAAGCTGCGATGCTGGAGGCGATCCGGAAAGTGGCATCAGGACGAAGGGCGATCTGCTCGGCGAGCGCTTCCTCACCTGCAGAAGATCAGATCTCACAGCCAGATGATCTCAGCATGGCATGCACTAATGAGATCTGTGAAAAGATCTTGGCCCTGTATTACTCTGACGACTTCGACAGACCTGGAGGAGAGAAAACTTCAGGAACGTCGCTAAAGTGCCACCAGGAGGTCCATGGAATAATGAAGGGCTTGGAAGAAGTTGTCTCCATCAGCAGGTCCTCTTTCGAGTTAACTCTAAAATCCTCGAGCCCTGATTCGGTCCCTGTGACGATTAAAGTGATGGCTCCTGATTGTGCTTCATCAGCGAATGCTGAGAGGCTTTTCAGTGATCAGTTTCTGAGTAAAGCCACACAAGAGGTCAGAAAAGTTCTTctgaaaacagaggaaaaaatcGCTGCCTCAGTGTCGTCCCAAACCTCCGTCCCTGTCCGCAGTGAGACAGAAACGAATTCCCTGATGGAGGAGGTCGAGAGCACATCCTCAGAAATTCTgtggaaattattatttatacttatacaGTCACTGTGTAAAAGTTCATCAGGCGTCAGCTGCAACGATGCTGACCAGTCTGCACCAGAAGATGAGCAGAAGAACTTCCTCTCTGGTGCTGAAAAGATCCACGAGAACATCTTCAAGCAGGTGTTTACGTTCGTCTCTGGGCGGAAGCGAGCCATTTCCGAAAAGAACAAGTTGATGTTGGACGTCTGTCCTAAAACTGCTGCTGAGCTCAACGTCAGGTCGGAGAACGTACAGGAGCCTGCTGCTGCCGCTGAACGTTTCCTCGATAAAGCCATTCTGGTTGCGAGTGAGATCCTAGAGAAGTGGTTATCTTCACATATTTCCACAGGTTTATTCAGTGGGAAAGATTCAGGTTCCAGCACAGAGTCGTCACCGACGGCGTCAGTAGATCTGGATCGAGTCACTGCTGATATCGTAAACACGGTGATCAGTGGAATTGCTCTCGAGAATGGAATAACTGACGTGGAAAACGGATCGGAAGCTCGGGTAGGTGGAGCTCAGGTGAACGATGCTGATGCTCGCTCAGCTCCCTATTCAAAGAACTTCTCAGACGTTTTCACGAAGCTCCGAAGTCTTATTGGACTCGGAGATAAAAAGAGACAGTCGTGCTCGTGCCTGAagaatgcagcagcagcagaagtgaCTGCTGCTCAGAGCCTCGTGTCCGTCAGCGAAGCTCCAAACCTGCAGGCTGTTATTGACAGCTGCACTGAGGAGCTCATCGAGAAGAACGCAGATATATTTCTGCATGACGAGCTGCTGGCCAAGTCCAGCTCTTCTAAAGCGCCTCGGCTCAGACGGTTTGCGTTCCTGAGGCCGCGTAAATCCGGTCAGCAGATTGTTTCCGAGGTAAAAAAGACCTGTGAAGTGAGCAGTTCTGTCCCTCTGAGGTCTAAGGAGCTCCTCAATAAAGCCACTCAGGTGGTGAGTGTGATGCTGCTCAGAAGGTTGTCCACAGCAGATTCTTCGATGTGCTCATTAGAAGACGAACAAAGTGCCGTTAGTACCGCAGATTCGCTCGTCAGGGTTTTATACGAATGTGACGAGTCTGTGAAAGAGGAGACTAAGAGCTCTGACGCTCTCGATGCCTTGTCCTGCTTCTTTGACGTCAGAGAAGCAGAATCTGACAAAAAACCACGGAACGTGTTGAGAAAAGTGCGAAGTCTCCTTCAGGCCTTTTTCTCAAAGGCATCTGAAGCTCTGAGCTCTCCCACACACGAGGAGAGGGTGGAGGAGAAGGTGGACCTGGACCTGTGCACCAACAGGGTCATTGCCGAAGTCATTGATTTGTTAAGGAGTGAGCTGACAGCTCCACCTACAGTGAAGAACGATGACGCCTATTTCCACTCCAAATCCACCAGGCGTGTGAGTGACATCATCTTCCGAATGGTGGAATCCTGTCCTCTGCTGCCCTCACAATTCCCAAAGGAACGCCACACGGAATCGCGTCTCAGGAAAGTGGCGTCCGCTTTAAATCTGCAGGTCGTTTCTACTGCTTCTGAGATTTCCCGAACTGTTAGCTCCACTGTGCAGCAGTTTATAGATGCAGACAGGAAGTCGAGGCCTTCGGTCCAGAGCAGTTCATTCGCTCCTCTGCACCTTTTCACTGTGGTGCGCAACAAGCTGAAGGCTTTCTTCACTTCCTTCTCTAAACGTGTCGCTGATGATGAAAGGACAGATGCATCAGCACAGTCAGAGAGGGATGAGGATCGTGTCACTCCCATCTACATCAGTGAGGATGGCACGGTTCATGAGCTAAGAGAGCTGGAGGATCTTTCTCCGGAGGAGATGATACATCGACGAGCACGTGCTATTACGGACGTAATCGCAAAACTCCTCCTGAGGAACGTGGACAGGGCAGGAGATGTTGGCCAGCGTTCATCAGATTCTGTTCTGGGGAGAGGGAACATCACGTTACGCTCCATCCGGTTACCTTCTCAGTGCGTTTACACGTTTGCAGAGGAGTCCATCAAGGCTTTACTGCAGAATGTGCTGAACGCCGGGCCGAGTGCAGGAAACGAAGCACAGGAAAGCAGCTTGGCGGACGAATCGACCTGTTGTCCTTCTGCTACAGCACTCGCACGTAAAATCGAGGACGCTGGGACTTCCTCTGTGTGTCGTATTAACGATTTGCATCCTAAGTCTCCTCAGCTATCAGCAGCTTCCTCCAGCTCGTGTCCTCGTGCTGACGTGGAGGAGACTCGGGAACATCTGAGCATCACCGATCAGCAGAATCGAAGCGGAAGTGATGGATGCTCCTCACATCCAGCAGCTGAGgatcaggagaagaaaaagaggcttGGACTCCTCACAAGGAACGGGCGCATGATCAGAAGTGGAGTTAAGTGTCCCAAGAAGTGGAAGAAGAACCAGAGCAGAGTTCCTCTGACAGGCGATGACCAACCGACCCCTTCCACCTCCGCAAATCTTCACAGCTCTTCACACAGAGAATCGAAGGCCTCGGGGTCGGTCTTCAAGAATGCTCGCAGAAGGCTGGGCAGGATCTTCTCCAACATCTCCAAGACCTTCACCAGCTGCTCCAACCCTGAAACCGCTCCATAAACTCGTCAGCGTCGGCCTGTGCCCGGTGACCGTTAACCGAGTTACCGTGGTAACAGACACCAGCGAcggaaacacaaacaaacaaacaaacaaaacaaacaaacaaacaaacaaaaaacaaacaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252169 lncRNA upstream 427037 17980998 ~ 17982806 (+) True G212899
TU252159 lncRNA upstream 510862 17898781 ~ 17898981 (+) True G212889
TU252140 lncRNA upstream 523561 17886009 ~ 17886282 (+) True G212870
TU252066 lncRNA upstream 583493 17819418 ~ 17826350 (+) True G212804
TU252045 lncRNA upstream 627915 17781712 ~ 17781928 (+) True G212783
TU252293 lncRNA downstream 9847 18425194 ~ 18426053 (+) False zgc:163143
TU252294 lncRNA downstream 9847 18425194 ~ 18427626 (+) False zgc:163143
TU252290 lncRNA downstream 9892 18425239 ~ 18427626 (+) False zgc:163143
TU252491 lncRNA downstream 101966 18517313 ~ 18565782 (+) True G213191
TU252492 lncRNA downstream 115012 18530359 ~ 18534344 (+) True G213192
XM_034310284.1 mRNA upstream 41254 18360781 ~ 18368589 (+) False tac4
XM_034310283.1 mRNA upstream 41254 18367397 ~ 18368589 (+) True tac4
XM_034309862.1 mRNA upstream 66883 18184019 ~ 18342960 (+) False LOC113528485
XM_034309692.1 mRNA downstream 9832 18425179 ~ 18434528 (+) True zgc:163143
XM_034309693.1 mRNA downstream 9832 18425179 ~ 18434528 (+) False zgc:163143
XM_034309694.1 mRNA downstream 9832 18425179 ~ 18434528 (+) False zgc:163143
XM_034309691.1 mRNA downstream 9832 18425179 ~ 18434528 (+) False zgc:163143
XM_026916958.2 mRNA downstream 33939 18449286 ~ 18451161 (+) True LOC113528424
XR_004579361.1 other upstream 67906 18184019 ~ 18341937 (+) True LOC113528485
TU251743 other upstream 1300568 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 2264459 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 2441084 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 2596512 15813242 ~ 15813331 (+) True trnar-ucu_8
TU252614 other downstream 499379 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 499379 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 728727 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 886008 19301355 ~ 19313218 (+) True gng13b
TU253379 other downstream 1490855 19906202 ~ 19910165 (+) False LOC113528458

Expression Profile