RNA id: XM_026916912.2



Basic Information


Item Value
RNA id XM_026916912.2
length 665
RNA type mRNA
GC content 0.43
exon number 4
gene id mettl23
representative False

Chromosome Information


Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18050735 ~ 18054216 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TGAGTCCACGTTTTATCCAGAAAACGTTCACGTTTGAGAACCACGATGGCACACATGCATTGATGGTGTCTGTCCCAGAGGTAGTGAAAGTCCGAATGCTATATTACTAATGCTAGGTGCTGGGGTGAGCTTGCCAGGCATTGTGGCTGCGAAATGTGGAGCTCATGTGACTCTTTCAGACAGTGCTGAAATTCCTCTGTGCCTAGAAAACAGCAGGCGCTGCTGTGAGCTTAATGATCTGCATGGAGTGCCTGTGGTTGGTCTCACCTGGGGAGAGATATCACCAGAGCTGAGGTCTCTACCACCTGTAGACATTATACTGGGTTCAGACGTTTTCTATGAACCTGAAGATTTTGAAGATGTACTTGTAACAGTCTCCTTTCTTCTAAGGCGAAACCCTTCTGGCCAGTTCTGGACCACATTTCAGGAAAGAAGctcagacTGGACTATAGAAACTTTGCTGAACAAATGGAACCTGCGGTGCACTGATGTCCCATTGGATATATTTcatgcaaacaaaaaacatctagcTGGATCGACTCTGCCTGGAAATCATTCAATACAAATGATGATTGTAACAGCAAGGACTAAGacataattatgttttttgtatGTAACCATAATACTGcttgaaataataaacagttcTACAGTTagaaacaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU252315 lncRNA downstream 7524 18041404 ~ 18043279 (-) True G213028
TU252161 lncRNA downstream 150533 17900070 ~ 17900270 (-) True G212891
TU252141 lncRNA downstream 164561 17886012 ~ 17886242 (-) True G212871
TU252126 lncRNA downstream 170957 17879629 ~ 17879846 (-) True G212856
TU252085 lncRNA downstream 180151 17869886 ~ 17870652 (-) True G212818
XR_004579431.1 lncRNA upstream 16654 18070785 ~ 18076387 (-) True LOC117599003
XR_004579422.1 lncRNA upstream 321553 18375684 ~ 18377255 (-) True LOC117598999
TU252732 lncRNA upstream 738304 18792435 ~ 18849147 (-) True G213407
TU252741 lncRNA upstream 769340 18823471 ~ 18827432 (-) True si:dkey-204f11.64
TU252898 lncRNA upstream 969627 19023758 ~ 19031157 (-) True G213549
XM_026917086.2 mRNA downstream 64915 17981013 ~ 17985888 (-) True jmjd6
XM_026916227.2 mRNA downstream 116387 17930709 ~ 17934416 (-) True foxj1a
XM_026916226.2 mRNA downstream 116389 17930710 ~ 17934414 (-) False foxj1a
XM_026917216.2 mRNA downstream 178222 17811613 ~ 17872581 (-) False tsen54
XM_026916697.2 mRNA upstream 47310 18101441 ~ 18161879 (-) True LOC113528252
XM_034310201.1 mRNA upstream 335751 18389882 ~ 18394978 (-) True LOC117598994
XM_034310203.1 mRNA upstream 522473 18576604 ~ 18577377 (-) True LOC117598995
XM_034310063.1 mRNA upstream 656949 18711080 ~ 18720341 (-) True znf207a
XM_026916637.2 mRNA upstream 656949 18711080 ~ 18720334 (-) False znf207a
TU252076 other downstream 197164 17828167 ~ 17853639 (-) True tsen54
TU252009 other downstream 375519 17674827 ~ 17675284 (-) True G212750
TU251953 other downstream 624902 17386211 ~ 17425901 (-) True G212700
XR_004579434.1 other downstream 731084 17292851 ~ 17319719 (-) False LOC113528519
TU252457 other upstream 321946 18376077 ~ 18377363 (-) False LOC117598999
trnat-cgu_6 other upstream 1022138 19076269 ~ 19076340 (-) True trnat-cgu_6
TU253095 other upstream 1390858 19444989 ~ 19448334 (-) False rbbp6
TU253598 other upstream 1986292 20040423 ~ 20063490 (-) False slc2a9l2
trnal-aag_9 other upstream 2358718 20412849 ~ 20412930 (-) True trnal-aag_9

Expression Profile