RNA id: TU252491


Basic Information

Item Value
RNA id TU252491
length 227
lncRNA type sense_over
GC content 0.54
exon number 2
gene id G213191
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18517313 ~ 18565782 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggagtgaatgaccagcgctctctcccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccgggcgccgcagcaaaaaaaaaaaaaaaaaaaggctgcccactgctctgggtgtgtgttcacggtgtgtgtgtgtgcacttggatgggttaaatgcagagcacagattccgagtatgggtcctcatacttggccacaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252176 lncRNA upstream 53290 17964793 ~ 18464023 (+) False G212903
TU252175 lncRNA upstream 53290 18385812 ~ 18464023 (+) True G212903
TU252294 lncRNA upstream 89687 18425194 ~ 18427626 (+) False zgc:163143
TU252290 lncRNA upstream 89687 18425239 ~ 18427626 (+) False zgc:163143
TU252293 lncRNA upstream 91260 18425194 ~ 18426053 (+) False zgc:163143
TU252523 lncRNA downstream 140635 18706417 ~ 18713626 (+) True G213221
TU252548 lncRNA downstream 280434 18846216 ~ 18898291 (+) True G213244
TU252634 lncRNA downstream 393248 18959030 ~ 18960740 (+) True G213314
XR_004579329.1 lncRNA downstream 513680 19079462 ~ 19082157 (+) True LOC117598754
TU252799 lncRNA downstream 513828 19079610 ~ 19081890 (+) False LOC117598754
XM_026916958.2 mRNA upstream 66152 18449286 ~ 18451161 (+) True LOC113528424
XM_034309692.1 mRNA upstream 82785 18425179 ~ 18434528 (+) True zgc:163143
XM_034309693.1 mRNA upstream 82785 18425179 ~ 18434528 (+) False zgc:163143
XM_034309694.1 mRNA upstream 82785 18425179 ~ 18434528 (+) False zgc:163143
XM_034309691.1 mRNA upstream 82785 18425179 ~ 18434528 (+) False zgc:163143
XM_026917183.2 mRNA downstream 67716 18633498 ~ 18697593 (+) True tnrc6c1
XM_026917184.2 mRNA downstream 67716 18633498 ~ 18697593 (+) False tnrc6c1
XM_026917185.2 mRNA downstream 104599 18670381 ~ 18697593 (+) False tnrc6c1
XM_026916083.2 mRNA downstream 227522 18793304 ~ 18801817 (+) False yipf2
XM_034309923.1 mRNA downstream 227523 18793305 ~ 18801817 (+) True yipf2
XR_004579361.1 other upstream 175376 18184019 ~ 18341937 (+) True LOC113528485
TU251743 other upstream 1408038 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 2371929 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 2548554 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 2703982 15813242 ~ 15813331 (+) True trnar-ucu_8
TU252614 other downstream 348944 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 348944 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 578292 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 735573 19301355 ~ 19313218 (+) True gng13b
TU253379 other downstream 1340420 19906202 ~ 19910165 (+) False LOC113528458

Expression Profile