RNA id: TU252615


Basic Information

Item Value
RNA id TU252615
length 1369
RNA type TUCP
GC content 0.41
exon number 6
gene id smim22
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18914726 ~ 18919942 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCAGCGCGGAGCTACACAAAGAACTACTTTGATAGTTTTCTTCCACCTCTAAAAGTGCAGTTCTgtatataggaaaaaaaaatacgttTAAACATTCTAATTCATGTTTAATTCCAGAACGCCATTATACCGTcaagaaattaaattattattatcaaattatatCGAAAAATATACTTGCATTAATTCAAGCATAAACTATGTGCTAATTTCATTAGCATGCTCCACCGTATGCTTAACCACTAAAATAGCTCATTTatctacaaacttttggtcatttAAGCATTCCGTGGAGCATGCTAATGAAATTACCACGTAGTTTATGCTTAAATTAATGCAACTATATCCTTTCGATAGAATAGGAAAAACTCCATTCAGGTTTCACTGTAGTATTGGGCTAATTACTGAACTACTAAAGGAATCGATTCGAATCGACTCCCATTCCTGACAGTAGAAACTGAGAATCGACACCAAAGTTTAGAGTTGATTCCACGCAGTACATTTTATATGACTCAAGCTCACGCGCAGGCAATGTAAAGCAGCCTGCTCGTGAGTGTGAGCCAATCCTAGCGCGGAAGGCGGGATTTTACGAAATGCGGGTGGGAAATTAAATAAGCCCGTCCAAACTCCACGTAAACCAAAGGGTCAGGGGTTGTGTTTGGAAAAGAGGGCCTCGTAATTCGAGACAACGCCACCTGGTGTTTAGTGTGAGTGAGGAACATGGTGCGCATGCGTAGTGTAGGCTAAAACCCAGGCAGGTTGATGCAGGTGAGCTGCTGCGACAGGTGTATTCCGGAAGCCAGATAGAGAAATCAGCAAAATCACAGCCACGATGTCTCAGGGCAACCTGCAGGAGGATTTTCAGAACCAGGTCAATGATGTTTTCACCCGGCTGCAGAACAAGGAGATGTTTCAGTCTGACTGGGACATCGCCTCCTTCGccattttcttcatcttcatcgGTATGGTTCTGCTGCTCATCATTCTGGTTCTCATacgctgctgttgctgctgctgcttctgcgaCGAAAAGCCCAAAAGACAGAAAGTGGGTATCGACAACATGGCACTGCAGCCATAAAGCTCGAGATTAGCGTCCAGCATATTCATGATCCCTTTCAAAATccttgaaaaaaatgtttttactgcCCTAATTTGCCACATATTGCTTATGAATATTCTGAGTGTAAGAGACTGTAGAAGATGACGAAGTAAACAGAATGTTTCAAAGGTGAAAGTCGACACCTGCACTGTAAATATGATGGATGAATATTTACTGGAGCTGAATTTAATTTATCGTTTACAATgactgatttttaaatgtaaaagtgcTCTTTACTTTCAGTTGTAATTGTACTCTACTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252548 lncRNA upstream 16435 18846216 ~ 18898291 (+) True G213244
TU252523 lncRNA upstream 201100 18706417 ~ 18713626 (+) True G213221
TU252491 lncRNA upstream 348944 18517313 ~ 18565782 (+) True G213191
TU252492 lncRNA upstream 380382 18530359 ~ 18534344 (+) True G213192
TU252290 lncRNA upstream 487100 18425239 ~ 18427626 (+) False zgc:163143
TU252634 lncRNA downstream 39158 18959030 ~ 18960740 (+) True G213314
XR_004579329.1 lncRNA downstream 159590 19079462 ~ 19082157 (+) True LOC117598754
TU252799 lncRNA downstream 159738 19079610 ~ 19081890 (+) False LOC117598754
TU252813 lncRNA downstream 187338 19107210 ~ 19161120 (+) True G213475
TU252837 lncRNA downstream 351459 19271331 ~ 19271589 (+) True G213498
XM_026916207.2 mRNA upstream 14745 18877674 ~ 18899981 (+) True rgs9a
XM_034310205.1 mRNA upstream 14745 18877674 ~ 18899981 (+) False rgs9a
XM_034310206.1 mRNA upstream 14745 18879148 ~ 18899981 (+) False rgs9a
XM_026916887.2 mRNA upstream 78525 18829293 ~ 18836201 (+) True clpp
XM_034309923.1 mRNA upstream 112909 18793305 ~ 18801817 (+) True yipf2
XM_026916001.2 mRNA downstream 18699 18938571 ~ 18954755 (+) True engase
XM_034310299.1 mRNA downstream 51526 18971398 ~ 18980644 (+) True coil
XM_026916029.2 mRNA downstream 62001 18981873 ~ 19026526 (+) False rab11fip4a
XM_026916028.2 mRNA downstream 62725 18982597 ~ 19026526 (+) True rab11fip4a
XM_026916030.2 mRNA downstream 76502 18996374 ~ 19026526 (+) False rab11fip4a
XR_004579361.1 other upstream 572789 18184019 ~ 18341937 (+) True LOC113528485
TU251743 other upstream 1805451 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 2769342 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 2945967 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 3101395 15813242 ~ 15813331 (+) True trnar-ucu_8
TU252829 other downstream 224202 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 381483 19301355 ~ 19313218 (+) True gng13b
TU253379 other downstream 986330 19906202 ~ 19910165 (+) False LOC113528458
XR_004579366.1 other downstream 1013952 19933824 ~ 19953286 (+) False LOC113528304
TU253418 other downstream 1058442 19978314 ~ 19981380 (+) True G214015

Expression Profile