RNA id: TU252741


Basic Information

Item Value
RNA id TU252741
length 1101
lncRNA type sense_over
GC content 0.36
exon number 3
gene id si:dkey-204f11.64
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18823471 ~ 18827734 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTCAGGAGCagagtgtgtctctgtgcactctttcactctttcagtGTTTCTTCGGAGCAGTCATTTGAATGAAATGTCCAACAACAGCGCCAACAGCAGTAACCTGCTTCTCGCCCAAAAAGCTGTCAAACAGCTGCGGCTTGAGGCAAGCGTCCGCAGAATCAAGGTTTCACAAGCTGCGGCTGAGCTGAAGACATTCTGCTTGCAAAATGCAAATAAGGACCCTTTGCTTGTGGGGGTTCCATCCAGTGATAATCCATTCCGGCCTCCCAAATCCTGTGCACTCTTCTGAGATGAAAGGACGAGGCCTTGAAAACACGTCTTACTAGTCGCCCTTCATTCACTTCATAAGTGAACTCTGCAGCTAGACCAACACtgcttttacattttcactagcctctttatttttgtgagaagttttatagagttttaaaatgtgttgttcttaTGTTGTGTTCTGTAATTTGACCTTAAAAGAGAAGACTTTATGTATTGTTTAATTAGAGTAAAAATAAAGGATGTGTGCAGACATAGAAGATCAAATTCTCAGGCTCTTGGTTTTAAAACACTAAATTACTTACCTTTCTTTGGCTTTTTATGTGTCTAAAACATAAGCATGAAACCTAACAAGCCTTCCAGGTCATATAAGAAAGCCATATAAAGTATTTTAAGTTTCAAgtgtcttttgctttttttctgcaatGAATATTTCTTGGATATCAGTAGACTAAATGAGTGCCATTGCTTTTACGCTGATTGTTTTTAAACTGCAAGAAAAACTGTAGTGTATTGTATGAGATATAATTGGTATCTTGACCAAACTTGAGGACCCAGCTGTTTATACTGAGTCATAAGCAACGGCAGatataaaattatgaatacACCTCTTTTGTTTAGATTACATTATCATTGTTTAGAAGGTTCAATTGCgatttttgttttctaaaaaaaaaataaataaaaaaataaaataaagctatCTCTCTTTTCGTACTGAATACGTTTTACATAAGGAGTGAGTATTTTCAAACAAATTGTAAATTCTGTCAGGCTTTTGGTGCCTTAAAATATAATTGGTTACTGCATAATGTTAATGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579422.1 lncRNA downstream 446216 18375684 ~ 18377255 (-) True LOC117598999
XR_004579431.1 lncRNA downstream 747084 18070785 ~ 18076387 (-) True LOC117599003
TU252323 lncRNA downstream 769256 18050735 ~ 18054215 (-) False mettl23
TU252320 lncRNA downstream 769256 18050833 ~ 18054215 (-) True mettl23
TU252315 lncRNA downstream 780192 18041404 ~ 18043279 (-) True G213028
TU252898 lncRNA upstream 196326 19023758 ~ 19031157 (-) True G213549
TU252899 lncRNA upstream 197640 19025072 ~ 19072985 (-) False G213549
TU253100 lncRNA upstream 589752 19417184 ~ 19422415 (-) True G213716
TU253270 lncRNA upstream 835905 19663337 ~ 19663762 (-) True G213879
TU253468 lncRNA upstream 1112922 19940354 ~ 19984149 (-) False lyar
XM_026917230.2 mRNA downstream 5162 18803479 ~ 18818309 (-) False carm1
XM_026917228.2 mRNA downstream 5164 18802031 ~ 18818307 (-) True carm1
XM_026916191.2 mRNA downstream 30512 18790181 ~ 18792959 (-) True timm29
XM_026915999.2 mRNA downstream 66795 18735653 ~ 18756676 (-) True slc25a23b
XM_034310063.1 mRNA downstream 103130 18711080 ~ 18720341 (-) True znf207a
XM_026916886.2 mRNA upstream 8761 18836193 ~ 18843733 (-) True aldh3b1
XM_034309992.1 mRNA upstream 8761 18836193 ~ 18843313 (-) False aldh3b1
XM_026917128.2 mRNA upstream 24024 18851456 ~ 18872146 (-) True gna13b
XM_026916703.2 mRNA upstream 75231 18902663 ~ 18915773 (-) True cog1
XM_026917282.2 mRNA upstream 94704 18922136 ~ 18936509 (-) True rogdi
TU252457 other downstream 446108 18376077 ~ 18377363 (-) False LOC117598999
TU252076 other downstream 969832 17828167 ~ 17853639 (-) True tsen54
TU252009 other downstream 1148187 17674827 ~ 17675284 (-) True G212750
TU251953 other downstream 1397570 17386211 ~ 17425901 (-) True G212700
XR_004579436.1 other downstream 1503752 17292851 ~ 17319719 (-) True LOC113528519
trnat-cgu_6 other upstream 248837 19076269 ~ 19076340 (-) True trnat-cgu_6
TU253095 other upstream 617557 19444989 ~ 19448334 (-) False rbbp6
TU253598 other upstream 1212991 20040423 ~ 20063490 (-) False slc2a9l2
trnal-aag_9 other upstream 1585417 20412849 ~ 20412930 (-) True trnal-aag_9
TU254170 other upstream 2187007 21014439 ~ 21027259 (-) True fgf2

Expression Profile