RNA id: TU252813


Basic Information

Item Value
RNA id TU252813
length 1754
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G213475
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19107210 ~ 19161120 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGCAAATATTCTGCTGCGCTCTAACAGATGTTTTCAGAAGGCACAAACACAAATGAGGTACAAAGAAGATACAAATTCACTGAACCGTCACAGTTTGATAAGCGGCGCTACGTGTCAGGTTACGTGTTCAACAGCATTATAATAGCTAAGTACCTTTTATAAGTTTTTAAAtaactgaacaattttttttccaatattgACTCACTGACTAGTGTTGATCTGTGTCCAAACTGGATTTTATTCTTCCGACTTCTCATTCTATAAATGACAACTGATAGAATTGCACTACTTTTCTCATCTAGCAAGTAAGTAAGCTTGTAATTTAGCAagtttgttcatttcatttttggacaGTAGATAATTGTACTAAGTAGTCAGGGTAAactttgttgctgtttttttttttttttcaaaaatgtaataatttacaGTAGCCATCACCACTAATCAAGAATGTCACTATGTAAAAGAGAACAATTTTTCTCATAAATCAATCAAAATTGAGGTTGCTAAATGTATGCACGACATTCACATTTGTTTTGCACCAGTTTCATTTCAGTCCAGATCCCAgagattagcattagcatggaGAGAAAATCATTATTACTTCAGAAGctcacgagagagagagagcgagagagtgagagtgagaacgAAGGAAGCAACCTCAAAGATCTGCATCTGAGCTTGTGTGGTAAACCAGCATGCTTTGCAACTCACGGCTGCACATACTATATCTATAAAAACCTCAAACACACCTGTTACTATGAGGAGAGTGCAAACGTTGACTCTTTTTAGGCACAAACCATAATGGTCgaaaataattcatttcacCTGTAAATCTTATTTGGATAATCAGAATAAAGTCcttattattcttttctttagTCGTACTTCTCTTTAGGACTGTTTCTTAATATGCGTCTATGCATTCTTGTCTACGTTAATGTTcttttgtagatttaaatggatttattttttaaacagcgAATGAGTATTCCTGATCAAAATTAGCAAACTGGTTATATCTTTGGATAAGCATAAGGCGTATACAGACCCTTTTGTTTTGATCAGTGAAGCTAGCTAGACTGCTGGATGTTTATAACTTATTCTaacgtttttgtttttgttttgtaatctGAGCGGAGCTCTGTTGAAAATGAGCTTCCTAGGGGACATCCACCCATACATGTCAGCTGTGTAAACAGTGTAGGTAACCATGGGAGTGATACAGTATATGTGATGTCACTGCTGACCAGCTTGGCAAGGGAAAGGTCATCATATCAAATTCGTAAGAAGGAGGCTCTGGTTAGCTAggacagctagctagcaatcATATCTTGTGCTGACTTTAGCGAGTTTGTCACGTTAGGGTCGTCAGTGCATGTATCTTTTCTGTATCACAAGTAAAACATTAGCTGTTGGCTCATTAATGTTTAAATCTTAAAGCTGAAAGATGTTAGCATTTACAATAAAGGCAAGTACACAGCACATCTCTCATTGTTCTTGTGTTCTTCTGAGTTTGTTCTTACAAGTTAACCTGGCAAGAACTTTCTTTACGTTCCTGGTATTGACGAACCACTCAATGTTACAACTCAGTCAAGCTTCACTCCTATAGGTCACCCAGTACCCCAACAAatacatggttaaaaaaaacttaaataaatcatgtgcTTGGTGTTACAATAAAATAGTGGATGCAGGACTCTAAcagggtttttaaaaaaaaaaaaaaaaaaaaaGAGGGGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579329.1 lncRNA upstream 25053 19079462 ~ 19082157 (+) True LOC117598754
TU252799 lncRNA upstream 25320 19079610 ~ 19081890 (+) False LOC117598754
TU252634 lncRNA upstream 146470 18959030 ~ 18960740 (+) True G213314
TU252548 lncRNA upstream 208919 18846216 ~ 18898291 (+) True G213244
TU252523 lncRNA upstream 393584 18706417 ~ 18713626 (+) True G213221
TU252837 lncRNA downstream 110211 19271331 ~ 19271589 (+) True G213498
TU252838 lncRNA downstream 110479 19271599 ~ 19271813 (+) True G213499
TU252845 lncRNA downstream 140255 19301375 ~ 19313210 (+) False gng13b
TU252846 lncRNA downstream 140255 19301375 ~ 19313210 (+) False gng13b
TU252847 lncRNA downstream 140255 19301375 ~ 19313210 (+) False gng13b
XM_026917224.2 mRNA upstream 9442 19082598 ~ 19097768 (+) True suz12a
XM_026916029.2 mRNA upstream 80684 18981873 ~ 19026526 (+) False rab11fip4a
XM_026916028.2 mRNA upstream 80684 18982597 ~ 19026526 (+) True rab11fip4a
XM_026916030.2 mRNA upstream 80684 18996374 ~ 19026526 (+) False rab11fip4a
XM_034310299.1 mRNA upstream 126566 18971398 ~ 18980644 (+) True coil
XM_034309915.1 mRNA downstream 30370 19191490 ~ 19270909 (+) False caskin1
XM_034309699.1 mRNA downstream 140234 19301354 ~ 19313218 (+) False gng13b
XM_034309700.1 mRNA downstream 140235 19301355 ~ 19313218 (+) False gng13b
XM_034309698.1 mRNA downstream 140235 19301355 ~ 19313218 (+) False gng13b
XM_026916893.2 mRNA downstream 140235 19301355 ~ 19313218 (+) False gng13b
TU252614 other upstream 187338 18914726 ~ 18919872 (+) True smim22
TU252615 other upstream 187338 18914726 ~ 18919872 (+) False smim22
XR_004579361.1 other upstream 765273 18184019 ~ 18341937 (+) True LOC113528485
TU251743 other upstream 1997935 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 2961826 16140330 ~ 16145384 (+) False LOC113527983
XR_004579333.1 other downstream 140235 19301355 ~ 19313218 (+) True gng13b
TU253379 other downstream 745082 19906202 ~ 19910165 (+) False LOC113528458
XR_004579366.1 other downstream 772704 19933824 ~ 19953286 (+) False LOC113528304
TU253418 other downstream 817194 19978314 ~ 19981380 (+) True G214015
XR_004579430.1 other downstream 861389 20022509 ~ 20076408 (+) False LOC113528520

Expression Profile