RNA id: TU252829


Basic Information

Item Value
RNA id TU252829
length 720
RNA type TUCP
GC content 0.46
exon number 3
gene id G213491
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19144074 ~ 19145240 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGACTTTTATGCctctaatatttaacaaaactgCATCACAGCATGGCATTGCAACTAACATGATATCACAACATGGCACTGTAACTAACACTGCATCACAGCATGGCACTGTAACTAACACTGCATCACAGCATGGCACTGTAACTAACACTGCATCACAGCATGGCACTGTAACTAACATAGTGCCACTGCATGGAACTGTAACTAACACTGCATCACAGCGTGGTGCTGTAACTAACACTGCATCACAGCATGGCACTGTAACTAACACTGCATCACAGCGTGGTGCTGTAACTAACGCTGCATCACAGCATGGCACTGTAACTAACACTGCATCACAACGTGGTGCTGTAACTAACGCTGCATCACAGCATGGCACTGTAACTAACACTGCATCACAACGTGGTGCTGTAACTAACGCTGCATCACAGCATGATGCTGTAACTAACACTGCATCACAGCATGGCACTGTAACTAACACTGCATCACAACGTGGTGCTGTAACTAACGCTGCATCACAGCATGGCACTGTAACTAACACTGCATCACAACGTGGTGCTGTAACTAACGCTGCATCACAGCATGGCACTGTAACTAACACTGCATCACAACGTGGTGCTGTAACTAACGCTGCATCACAGCATGGCACTGTAACTAACACTGCATCACAACGTGGTGCTGTAACTAACGCTGCATCACAGCATGGCACTGTAACTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579329.1 lncRNA upstream 61917 19079462 ~ 19082157 (+) True LOC117598754
TU252799 lncRNA upstream 62184 19079610 ~ 19081890 (+) False LOC117598754
TU252634 lncRNA upstream 183334 18959030 ~ 18960740 (+) True G213314
TU252548 lncRNA upstream 245783 18846216 ~ 18898291 (+) True G213244
TU252523 lncRNA upstream 430448 18706417 ~ 18713626 (+) True G213221
TU252837 lncRNA downstream 126091 19271331 ~ 19271589 (+) True G213498
TU252838 lncRNA downstream 126359 19271599 ~ 19271813 (+) True G213499
TU252845 lncRNA downstream 156135 19301375 ~ 19313210 (+) False gng13b
TU252846 lncRNA downstream 156135 19301375 ~ 19313210 (+) False gng13b
TU252847 lncRNA downstream 156135 19301375 ~ 19313210 (+) False gng13b
XM_026917224.2 mRNA upstream 46306 19082598 ~ 19097768 (+) True suz12a
XM_026916029.2 mRNA upstream 117548 18981873 ~ 19026526 (+) False rab11fip4a
XM_026916028.2 mRNA upstream 117548 18982597 ~ 19026526 (+) True rab11fip4a
XM_026916030.2 mRNA upstream 117548 18996374 ~ 19026526 (+) False rab11fip4a
XM_034310299.1 mRNA upstream 163430 18971398 ~ 18980644 (+) True coil
XM_034309915.1 mRNA downstream 46250 19191490 ~ 19270909 (+) False caskin1
XM_034309699.1 mRNA downstream 156114 19301354 ~ 19313218 (+) False gng13b
XM_034309700.1 mRNA downstream 156115 19301355 ~ 19313218 (+) False gng13b
XM_034309698.1 mRNA downstream 156115 19301355 ~ 19313218 (+) False gng13b
XM_026916893.2 mRNA downstream 156115 19301355 ~ 19313218 (+) False gng13b
TU252614 other upstream 224202 18914726 ~ 18919872 (+) True smim22
TU252615 other upstream 224202 18914726 ~ 18919872 (+) False smim22
XR_004579361.1 other upstream 802137 18184019 ~ 18341937 (+) True LOC113528485
TU251743 other upstream 2034799 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 2998690 16140330 ~ 16145384 (+) False LOC113527983
XR_004579333.1 other downstream 156115 19301355 ~ 19313218 (+) True gng13b
TU253379 other downstream 760962 19906202 ~ 19910165 (+) False LOC113528458
XR_004579366.1 other downstream 788584 19933824 ~ 19953286 (+) False LOC113528304
TU253418 other downstream 833074 19978314 ~ 19981380 (+) True G214015
XR_004579430.1 other downstream 877269 20022509 ~ 20076408 (+) False LOC113528520

Expression Profile