RNA id: TU253041


Basic Information

Item Value
RNA id TU253041
length 4155
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC113528521
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19373236 ~ 19455034 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGACAGTTCCAGTGTAGATGTTTACTCAAGGATGTTCTTAAAATGCGTATGTGTgcgtttgtgagtgtgtgtgtgtctgtgtgtgcgcgcgagtgcatgtgtgtgtgcgctctaCTATGCCTTGACGTACGCCTACCTTATCGTGGTATTGTGGAGTCCGAGATCAAGATAAGATGCTGACCTTTAGGATTACCTGATGGTGATATTACACGTTAAATGAGTATTGCACcaatttatctttctttttttgtgtgttttaaaagaaaactaaaGAATTTAGCATTCTGCAGTCTAAAGAAACTGTAGCCACAGCTGTGACTCgcaaaaaaacagcactttgaAGATAGGCTTTGGATTACTTTGGTCTTTTTTGGAGGCGCCACATCGGGTTCCTCTTGTTTACAGACTTTCGAGGGGGGAAACGTACGCTCATTCTTccttcattttaaatgagaaacaaaaaaaatgcacaaaaacctttaaaaaattataaaatgagggaaaaataaataaaaaaatttaaaaataaaaaaagttggaaaaaaaaaaaaaaacctacagaaACCGTTGTGGATGAAGACGATGCGGTGTATCTCTGGGAAATACTGATCAGTGTTCGGCCATGCCGTCGGTTATTTGATGTATTCCTGTCGTCTGCTCAATAACCAGCATGGTTCTCAGGAAATATAGCCAGTTTTTCCCCCTCAAATAAAAACTCCTAATTGTAGGAAAAATCAACTTTTAGCACTGAAATGACTACTTGGAGCTGAGTGCGTTTATTTCTCTGCCAAATACCTGCTTTAAGCTGGAGACATTCTACACACCGCGCTCATCAAACTGCCCCACTCGCTTCCTTTCTCTAAGTCTGCTTCTTGCTGTCCTActcctcttttatttttgctaatatTCTCTTCTTATTACTCTTTGGAATTGTTTGGTCTTTTTTCCTTTATCGTTTATACAGTGGTTTTGTTTCATCTCTAgtcttttccatctttttttcttattctcattcttcttctcctctttctgCGTTTCATTCTTTCTCAGTTTTTCCTGCACCTTTACTCATATTCTACTATTGTTCCTTTTTTGTCtcattgttctttttcttcagtgtttgagtgtggtttaaaagaaaagaaaaagcagaaactATGCATTTCCTGTAGCTCTGTGACGgacttgctttttcttttttaagctcAAGTTTTCCCAAAAGGCATTTTGAAAAGCTCGTTGTAGATTAGCCTTTATTTTTCAGCACCGCCACAGACGGCAGTGTTAGTCTAACTTTTAACAGTCATCTacatttcattaaatgttttttttttttgttttgttttgttttttttttccatccccGAAGATGATGCAACACCGtggctttttaactgtttacaaATCGAGTATGATTGTAATGTGTACAGGTCTCTGAAGTTCTTTTACATTATGGATCAATCTGGCTGCTCGTGTCATTACTATTATCATTATCactatgattattattattattattattattattgtgttttccCTTTGGTTTCTCAGCGCTGGTGTGTCGGTGTGTGAACAGCTGGAGCCTCTGATTGCGCCCTCAGAGGGGAATGTAACCTAAACACACGCGTTAGTCATGTACATAACCATATATCGCATTGTTGATGCACAGAGATGTCAGCATTAGGCGAAGCCATGGaccttaatgtgtgtgtaagctgttTATGCTCCCtatttgcgtgtgtgtatgtgtgtgtgagagagatacaTGTTTAAACCCGTGAGTATTAGCCTTTATTTTGCGACTTTATGCTGAGTGTGCCAGTATTGAACCGTTTTAATAACCGCTTTACCAAATCGACTTTAATCAAAAGCTTCTGCGCTAAATGATTCCacaaatccattaaaaaaaaaaaaaaaaaaaaaaaaaccttaaaaaaaaaaatcctaaaatgcCTTGCGATTGCACTTGGTGTGTACAGTCACTGATTAAAGTGTTTGTCCACACAGAGTGTAGCTGTAGAGTGAGAGGAGGattatactctgtgtgtgtgtgtgtgtgtgtgtgtgtatctgtctgtccgTCCCCATTACACTCTAACTGTAccccactatacacacacttttactttgtgttgctctgtgtgtgtgtgtccagtccCTGGGGACGCTGttccccttcacacacacacacttccttgaTGTGTGGTGCTCCAAacttttgtgtgtgcatgcaggtATATGTCCACAGTGTCCGTTACACCTCACCCAACTGTCCATGACTACAGTACTCTTATTTAGCCTCTTCTAAATCCTTATTTGTTTgcaatgggtgtgtgtgtgtgtgtgcgcgtgcgtgcatgtgtggaAAATgctcaacaattacacacatctgCCTAGGCATGACTTTTCCGTGCGTGTTTTCTTACAATAATGCAGACTTAATGATTGTGAGTGTTGGTGCTGgtttgttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcttcctCTTTATGTTCATGTATTGCTCAGTCTGTCAGACTCTGTGCAGTGTTAATTCCACTTCTCATGTGCATTTCTGAATACGTGCTTTGTTTTGTGCGAGTGTGTGGGTTCTACCCATGTCGTCTtcactgtatgtgtgaatgaaCAGCTATGGATCTTCCTAGACTCCGTgtcccagcacacacacttcctttaaTGTGTattgttcctgtgtgtgtttcaccacAGTCTCCGTTACACTCATTACACTCTAACTACATGCGTCCATTACTACACTGCTGTTTATCCACCCAgtacattttttgtgtgtgttaatgtggagAAAAATCCTCTCTGAGCTTTAACAATTGTTCTAATTTGCGCTCGTTTCCCCCACAACTAGCTGACTGAAATAGAACAGGGGGGAGGGGGGCTTTAGCCACTGAGTTTCTTTCGTTTTCATTTTGTCCTCTTGTATATGCGGTGTTTATGTATGAATGAGAAAACAGTTCTGTAATCCACTGTCATGCCAAATCTAGGGAGGGAGTGCAGGAGGAAAGGGATTACTCTTTAAAAGCtggaatgtgtatgtgtgtgtttatgctaaCTGGATGGCAATGTACAATCCCCATAATGCATAATGGCAGCCGGGTAAACGGGGGTGGGAAGGGGTGGAATCTGGCATAGACATTCTACTTTTGTACTGAATGATTTGTTTCTAATTGATCCTGTGAGCAAATCatcgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttttatttctttttaaaaaaaaaaaatcgttccTACTGTTTGCAATTTTCGACTTTAAACTGTGAGAGCGTCTCGCCGTCGGTTGTTGTCGTTCCGATTCTCGATTGACAAAACCCTAAAAGCTTTAGAAAAAACCAGCACAAAGAGGCCGAACGAGAAACTCTTCCACCCTGGAGAACATTCGGAGAACGTCTATGCAGCGAAGGACGAGGCTTCCATTAGAATAATCTGTGTTTatgcttaataataaataaaataaaataatcccaAGTGGaatttaagggttttttttttaaaaataattaaaaaaatccttcaaACGCACGTGCCATGACTGACATCcgtatttttttgtgttttcttctccAAAAATAAAGCGGGCCAGTTGTAGCAGACTTTGGAGCATTATTAGCgttaatgttattgttaaatattaattcagCGACTTCATGACACTCCTCAGCggcaaaaatgtacacaaaaaaaaagttttaaactgAAAATACACCATTCTGGTTTTATGCTCACACAATGCGCGCATCCTTGATATGCACACTGCTTCGCTAGgactgtttttgaaaaatacaaagatttaAACGTCGCAGAAATGACATGAGCGAGCAGGAGGTCTCCTCAGCATTCCTGCTGTCGTCGTTAGCATCAATGTGTTTAGCTTGGGGGAAACTGCACTTTTTGAAGGACAATCCTTATTTGTAACGGTCATTGTTAACAATATTTAGTCGACGAATAATAACGAGAACACAAGGTAGAAACTCTTGTAGTGATGAATGTTTCCTCTAacgctgtttttattttcctctttgttGCTTGGTTTTCGATTTTAGTGCCCGATTTAAGTGGAATAAAGCCGTAGAGTAGGtttttagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252845 lncRNA upstream 104858 19301375 ~ 19313210 (+) False gng13b
TU252846 lncRNA upstream 104858 19301375 ~ 19313210 (+) False gng13b
TU252847 lncRNA upstream 104858 19301375 ~ 19313210 (+) False gng13b
TU252848 lncRNA upstream 104858 19301375 ~ 19313210 (+) False gng13b
TU252838 lncRNA upstream 146255 19271599 ~ 19271813 (+) True G213499
TU253054 lncRNA downstream 47606 19469862 ~ 19471356 (+) True G213678
TU253176 lncRNA downstream 208635 19630891 ~ 19631311 (+) True G213792
TU253224 lncRNA downstream 242448 19664704 ~ 19706850 (+) True G213834
TU253255 lncRNA downstream 275748 19698004 ~ 19715559 (+) True G213864
XR_004579341.1 lncRNA downstream 362157 19784413 ~ 19792659 (+) True LOC117598770
XM_026916188.2 mRNA upstream 55904 19355856 ~ 19362164 (+) True ndufab1b
XM_026916126.2 mRNA upstream 69644 19340379 ~ 19348424 (+) True dctn5
XM_034309680.1 mRNA upstream 69644 19340379 ~ 19348424 (+) False dctn5
XM_034309698.1 mRNA upstream 104850 19301355 ~ 19313218 (+) False gng13b
XM_026917162.2 mRNA downstream 321739 19743995 ~ 19768874 (+) True nsfa
XM_026916943.2 mRNA downstream 386707 19808963 ~ 19810891 (+) True msx1a
XM_026917158.2 mRNA downstream 404394 19826650 ~ 19842682 (+) True LOC113528548
XM_034309786.1 mRNA downstream 404394 19826650 ~ 19842682 (+) False LOC113528548
XM_026915985.2 mRNA downstream 438150 19860406 ~ 19885555 (+) True LOC113527852
XR_004579333.1 other upstream 104850 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 272828 19144074 ~ 19145240 (+) True G213491
TU252614 other upstream 498196 18914726 ~ 18919872 (+) True smim22
TU252615 other upstream 498196 18914726 ~ 18919872 (+) False smim22
XR_004579361.1 other upstream 1076131 18184019 ~ 18341937 (+) True LOC113528485
TU253379 other downstream 483946 19906202 ~ 19910165 (+) False LOC113528458
XR_004579366.1 other downstream 511568 19933824 ~ 19953286 (+) False LOC113528304
TU253418 other downstream 556058 19978314 ~ 19981380 (+) True G214015
XR_004579430.1 other downstream 600253 20022509 ~ 20076408 (+) False LOC113528520
TU254301 other downstream 1918160 21340416 ~ 21349086 (+) True hopx

Expression Profile