RNA id: TU253224


Basic Information

Item Value
RNA id TU253224
length 2039
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G213834
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19664704 ~ 19706850 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaataaatcataatacaaaacacagattttttgTACTAAAGTCAAATAGAAAAGTGATTTGTTGATATAGGGATATTTAACAACATAGATCATAAAGTCCATCTTTACTGAAAAAAGGTAGTAGTTACAACATGATCATTCTGTTTTGGCAGTGAATATAGCACACAGACTGTATGAAATATTGATTTGTTATGTGTAACCTAACATGTTAATGCAGTTAGCATATAAAACAAGGGGCAAAGACATTTTAGATAAGACAAGTAGAGACACTACTGCAAGGTAATCCTACTGCAAGATAAAGGGTTAAAAGTTTTAGAACAATAAACTACCTGGAATATGGCACATCACAGATGTTTTTGGTCTTACTGCATAAAAGATAAAATCTGGGCGGTGTTCCAATATTTGCTTTTATTCGCCTTTGTCCACCAGCTAATTAACGCTCTAGCGTTTTAGCAAGCAAGCCACTTAGGAAGCTGGCTACCTCGCATAAAATTCACTTCACACACCAGCTGTTTAGAATGCTAGACACTCAGTAATTTAGTTAGCATGATGATGCATTTGTTTGCCTGTCTGATGCCAACCCAACCCCTACATTCATTACACCTTGGACTATTATTTATGGTAATCATACTAAGTAGCATGCTAGAACGCTAGCAAGCTGATAGGACGCTAGCAAACTGATGCTACTGTAGGAAGTGTAGTTGGTGGTTCAGCTACATTGTTCTCACCGTTCTCACTGGAGTGTGTTACCGTTAAACAATCCTACATTCATCGTCTTATTGCGACCCATGACAGGACGTCGACAAGGACACTTTCACAGCATTACTGTAACATTGTAAAGATGTGGCTGACACACAATTCTCAAATAAAACTCAAATAGAACAACTGaggtaagacaaaaaaacaaaaccttatcATTCAAGAAGATGAACATTATAAATGAGGACTATTTCACACTCAAAGATAAGGAGATGGCACTGctgtttttaaacacacatatacacacaaagaaACTATGCAAAATAATCTAATTACAAGTTTATTATGTGCCATTTGGCAAGTATGGGCCATGTTCAGAGCTGAGATGCTCACAGTGAGGATTTAGTAGTGAAACTGTGCACATTGGCAGACTTAAAGACAGACTTAAATGCTATTCCGAAGTTACACCAGGGTTACTCATGCGGGGGCGGAGTTACGCACAATTCTAAAGTTCAGCGCCATTGTCTGACAGTTTGCTGTAAtaacaatatgtcatgctgaaatatatgttttgggttgtaaatcccctaaaaaaaaaaacaatggaatgtcatttgaggccaatattaaatataaatatgatatgatCCTATAAATTCATTAATAGTATCGTGTCTTTAAAGTGCATGCAAAGTTTTTTGCATAGAGGACATCGGTGACGTTGCTTAATTTGAGGACAACATTTTTATAGATTAAATTATGAATGACACAGAAAATGAGCTGTAAGCATAAACGCATTATTGTATTAATTTGACAACCcaaaatatcaaattaaaagTGTGGTAAAATagattacatcacacacattatgaaTTCATGACCTCAATTAAGTTTTTCATGGATTTCACGTATTTCAAGTATTTACTTGTGCACACAAGTAACTTTTGGCACACAATAGAAaactaaaatgcaaaataataagatatactggatcaagtgctaaTTTATAAGCTTACGCATAACAatggtggaagccatattgttaaattaatcccaatttgcagtgattaatgtgataattacaattatCGGATGATTCACGCAGAAAAATACCAGATTTACTGCATGTAAATGCATCTTGTcattcatattatattatattagtctattttattttttatttttatataatctcttgcttttaaaaaagaatactatttcttttcttagtccgcattttctatccctggttaaaggcaagtgcttgtctCGGGCGTATCTACACaggaaaaatctggcaacctcagaagCGTGGACTGCACGCTTTTCCGTTATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253176 lncRNA upstream 33393 19630891 ~ 19631311 (+) True G213792
TU253054 lncRNA upstream 193348 19469862 ~ 19471356 (+) True G213678
TU253047 lncRNA upstream 209670 19378888 ~ 19455034 (+) False LOC113528521
TU253044 lncRNA upstream 242448 19373236 ~ 19422256 (+) False LOC113528521
XR_004579341.1 lncRNA downstream 77563 19784413 ~ 19792659 (+) True LOC117598770
TU253382 lncRNA downstream 166226 19873076 ~ 19911732 (+) False LOC113528458
TU253387 lncRNA downstream 205289 19912139 ~ 19912375 (+) True G213984
TU253415 lncRNA downstream 261158 19968008 ~ 19970156 (+) True G214012
TU253526 lncRNA downstream 364845 20071695 ~ 20181878 (+) False G214098
XM_034309661.1 mRNA upstream 242311 19378853 ~ 19422393 (+) True LOC113528521
XM_026917118.2 mRNA upstream 242311 19378853 ~ 19422393 (+) False LOC113528521
XM_034309662.1 mRNA upstream 242311 19378853 ~ 19422393 (+) False LOC113528521
XM_026916188.2 mRNA upstream 302540 19355856 ~ 19362164 (+) True ndufab1b
XM_034309680.1 mRNA upstream 316280 19340379 ~ 19348424 (+) False dctn5
XM_026917162.2 mRNA downstream 37145 19743995 ~ 19768874 (+) True nsfa
XM_026916943.2 mRNA downstream 102113 19808963 ~ 19810891 (+) True msx1a
XM_026917158.2 mRNA downstream 119800 19826650 ~ 19842682 (+) True LOC113528548
XM_034309786.1 mRNA downstream 119800 19826650 ~ 19842682 (+) False LOC113528548
XM_026915985.2 mRNA downstream 153556 19860406 ~ 19885555 (+) True LOC113527852
XR_004579333.1 other upstream 351486 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 519464 19144074 ~ 19145240 (+) True G213491
TU252614 other upstream 744832 18914726 ~ 18919872 (+) True smim22
TU252615 other upstream 744832 18914726 ~ 18919872 (+) False smim22
XR_004579361.1 other upstream 1322767 18184019 ~ 18341937 (+) True LOC113528485
TU253379 other downstream 199352 19906202 ~ 19910165 (+) False LOC113528458
XR_004579366.1 other downstream 226974 19933824 ~ 19953286 (+) False LOC113528304
TU253418 other downstream 271464 19978314 ~ 19981380 (+) True G214015
XR_004579430.1 other downstream 315659 20022509 ~ 20076408 (+) False LOC113528520
TU254301 other downstream 1633566 21340416 ~ 21349086 (+) True hopx

Expression Profile