RNA id: TU253255


Basic Information

Item Value
RNA id TU253255
length 448
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G213864
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19698004 ~ 19715559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGTACATTACCTGAGCTGATCAGGTTTGCCCGTGTGCAGTCTTTAGGGTCTGTAGTGATTGGACAAGCATACATGTCTCCTGTCCGATTAGCCCGCAACTTAGGTTCCGCTTTCTCCTGTGGTGCACCAACCAGCAGTctaAGGTAACGCTCGTGCCCCACGGTTTGCCGGTGCATCGCTACTGAAAGTCCGAACAGGCTTCCGGGTGTGCCTCCCTCCTTCACCACCGCAAAGCGCGAGTCCAGGTTAAAACCCGCACACACACCAGAACACATAAGCACGAACAGCCCAGTCTGGACCGTCCGAAGTTGTGACGTCATTGTGCTGACCTTCTCCAAATAAGCCCAAGCTCCTGGCAAGCCTTGTTCTAGTCGTGCTCTTAACACGCACGAGCCGGTTAATGTCCAAGTCCAAGTACAgtaaagaggaggaggaggagaaagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253176 lncRNA upstream 66693 19630891 ~ 19631311 (+) True G213792
TU253054 lncRNA upstream 226648 19469862 ~ 19471356 (+) True G213678
TU253047 lncRNA upstream 242970 19378888 ~ 19455034 (+) False LOC113528521
XR_004579341.1 lncRNA downstream 68854 19784413 ~ 19792659 (+) True LOC117598770
TU253382 lncRNA downstream 157517 19873076 ~ 19911732 (+) False LOC113528458
TU253387 lncRNA downstream 196580 19912139 ~ 19912375 (+) True G213984
TU253415 lncRNA downstream 252449 19968008 ~ 19970156 (+) True G214012
TU253526 lncRNA downstream 356136 20071695 ~ 20181878 (+) False G214098
XM_034309661.1 mRNA upstream 275611 19378853 ~ 19422393 (+) True LOC113528521
XM_026917118.2 mRNA upstream 275611 19378853 ~ 19422393 (+) False LOC113528521
XM_034309662.1 mRNA upstream 275611 19378853 ~ 19422393 (+) False LOC113528521
XM_026916188.2 mRNA upstream 335840 19355856 ~ 19362164 (+) True ndufab1b
XM_034309680.1 mRNA upstream 349580 19340379 ~ 19348424 (+) False dctn5
XM_026917162.2 mRNA downstream 28436 19743995 ~ 19768874 (+) True nsfa
XM_026916943.2 mRNA downstream 93404 19808963 ~ 19810891 (+) True msx1a
XM_026917158.2 mRNA downstream 111091 19826650 ~ 19842682 (+) True LOC113528548
XM_034309786.1 mRNA downstream 111091 19826650 ~ 19842682 (+) False LOC113528548
XM_026915985.2 mRNA downstream 144847 19860406 ~ 19885555 (+) True LOC113527852
XR_004579333.1 other upstream 384786 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 552764 19144074 ~ 19145240 (+) True G213491
TU252614 other upstream 778132 18914726 ~ 18919872 (+) True smim22
TU252615 other upstream 778132 18914726 ~ 18919872 (+) False smim22
XR_004579361.1 other upstream 1356067 18184019 ~ 18341937 (+) True LOC113528485
TU253379 other downstream 190643 19906202 ~ 19910165 (+) False LOC113528458
XR_004579366.1 other downstream 218265 19933824 ~ 19953286 (+) False LOC113528304
TU253418 other downstream 262755 19978314 ~ 19981380 (+) True G214015
XR_004579430.1 other downstream 306950 20022509 ~ 20076408 (+) False LOC113528520
TU254301 other downstream 1624857 21340416 ~ 21349086 (+) True hopx

Expression Profile