RNA id: TU253387


Basic Information

Item Value
RNA id TU253387
length 237
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G213984
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19912139 ~ 19912375 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCGTGTTTTATTTTAGtacttaaaaatacatattgcCAGCTCATACCACAGAACAATTCAGAATTAAGCAGTtacaaaaaaatctgagaaaatcTGGTTGCAATGTGTTAGTTCAGTGTCTCCAGCTCAGACCAGAAGGGCATGAATCTTTGAATAtattctgcatgtgtgtgtttggatcaTAATGCTTGCTAGGTGCAGGTTCTTAAGACTGTATGAATGGATGGGAGTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253382 lncRNA upstream 407 19873076 ~ 19911732 (+) False LOC113528458
XR_004579341.1 lncRNA upstream 119480 19784413 ~ 19792659 (+) True LOC117598770
TU253255 lncRNA upstream 196580 19698004 ~ 19715559 (+) True G213864
TU253224 lncRNA upstream 205289 19664704 ~ 19706850 (+) True G213834
TU253176 lncRNA upstream 280828 19630891 ~ 19631311 (+) True G213792
TU253415 lncRNA downstream 55633 19968008 ~ 19970156 (+) True G214012
TU253526 lncRNA downstream 159320 20071695 ~ 20181878 (+) False G214098
TU253520 lncRNA downstream 229040 20141415 ~ 20144597 (+) True G214098
TU253523 lncRNA downstream 229040 20141415 ~ 20152693 (+) False G214098
TU253575 lncRNA downstream 301031 20213406 ~ 20214427 (+) True G214144
XM_026917018.2 mRNA upstream 1264 19908167 ~ 19910875 (+) True LOC113528458
XM_026916954.2 mRNA upstream 11155 19888315 ~ 19900984 (+) True mcm7
XM_026915985.2 mRNA upstream 26584 19860406 ~ 19885555 (+) True LOC113527852
XM_034310318.1 mRNA upstream 26584 19860406 ~ 19885555 (+) False LOC113527852
XM_026915987.2 mRNA upstream 26584 19860406 ~ 19885555 (+) False LOC113527852
XM_026916788.2 mRNA downstream 21449 19933824 ~ 19949014 (+) True LOC113528304
XM_034310034.1 mRNA downstream 51345 19963720 ~ 19996933 (+) False zbtb49
XM_034310033.1 mRNA downstream 71248 19983623 ~ 19996933 (+) True zbtb49
XM_026917103.2 mRNA downstream 71248 19983623 ~ 19996933 (+) False zbtb49
XM_026917102.2 mRNA downstream 71490 19983865 ~ 19996933 (+) False zbtb49
TU253379 other upstream 1974 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 598921 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 766899 19144074 ~ 19145240 (+) True G213491
TU252614 other upstream 992267 18914726 ~ 18919872 (+) True smim22
TU252615 other upstream 992267 18914726 ~ 18919872 (+) False smim22
XR_004579366.1 other downstream 21449 19933824 ~ 19953286 (+) False LOC113528304
TU253418 other downstream 65939 19978314 ~ 19981380 (+) True G214015
XR_004579430.1 other downstream 110134 20022509 ~ 20076408 (+) False LOC113528520
TU254301 other downstream 1428041 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 1428872 21341247 ~ 21348829 (+) False hopx

Expression Profile