RNA id: TU253415


Basic Information

Item Value
RNA id TU253415
length 618
lncRNA type intronic
GC content 0.41
exon number 2
gene id G214012
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19968008 ~ 19970156 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTAATGTGAAAAGTCAGTAAAttaatgtgtcttttttttttttttgacactgaGATATTCATGGGGAgatgtacatataaaataagTTACATACAatctaaaacataaaaaaaaaaggaatataaaaGAGGAAACGTCACTGCAGTGGGATCTGCGTCACGATGTGTCTGAAAATGTCTTCTCAGTTCATACAGCACAATGACAATAACATCTGATATGCGGACACACAAAGACGTCACTGCGAAAGCCAAATGGTCTacaaaaacactgctgtttcaCAAGATTGGGAatagaattgtgtgtgtgcatattctCGCCTTTATCCGAGTAGTGAGATTATCATCACTACTCCCATAAACTGAGTGAAGAGAATCACAGGAGTGAAGAAGGACCACACAGGCCACAGTGCAATGTTAaaCTGAAGGAGGCTGCGATGAACGCGGCGGTGGTGATTGGTGGAATCGCGGGGTATTCCTGATCATAATGCTGAATTCCTTTGAACCACTCCAGATACACAATGCAGAATGTGGCGAGGCTCAGACACACACCCAGCAGCACCAGGCCCACATTAAACCACcaactgcaacacacacacaaacaatgaaaaatatgaagTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253387 lncRNA upstream 55633 19912139 ~ 19912375 (+) True G213984
TU253382 lncRNA upstream 56276 19873076 ~ 19911732 (+) False LOC113528458
XR_004579341.1 lncRNA upstream 175349 19784413 ~ 19792659 (+) True LOC117598770
TU253255 lncRNA upstream 252449 19698004 ~ 19715559 (+) True G213864
TU253224 lncRNA upstream 261158 19664704 ~ 19706850 (+) True G213834
TU253526 lncRNA downstream 101539 20071695 ~ 20181878 (+) False G214098
TU253520 lncRNA downstream 171259 20141415 ~ 20144597 (+) True G214098
TU253523 lncRNA downstream 171259 20141415 ~ 20152693 (+) False G214098
TU253575 lncRNA downstream 243250 20213406 ~ 20214427 (+) True G214144
XR_004579413.1 lncRNA downstream 294042 20264198 ~ 20393220 (+) True LOC113528473
XM_026916788.2 mRNA upstream 18994 19933824 ~ 19949014 (+) True LOC113528304
XM_026917018.2 mRNA upstream 57133 19908167 ~ 19910875 (+) True LOC113528458
XM_026916954.2 mRNA upstream 67024 19888315 ~ 19900984 (+) True mcm7
XM_034310318.1 mRNA upstream 82453 19860406 ~ 19885555 (+) False LOC113527852
XM_034310033.1 mRNA downstream 13467 19983623 ~ 19996933 (+) True zbtb49
XM_026917103.2 mRNA downstream 13467 19983623 ~ 19996933 (+) False zbtb49
XM_026917102.2 mRNA downstream 13709 19983865 ~ 19996933 (+) False zbtb49
XM_026917105.2 mRNA downstream 30802 20000958 ~ 20002680 (+) True drd5a
XM_034310264.1 mRNA downstream 52357 20022513 ~ 20173352 (+) False LOC113528520
XR_004579366.1 other upstream 14722 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 57843 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 654790 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 822768 19144074 ~ 19145240 (+) True G213491
TU252614 other upstream 1048136 18914726 ~ 18919872 (+) True smim22
TU253418 other downstream 8158 19978314 ~ 19981380 (+) True G214015
XR_004579430.1 other downstream 52353 20022509 ~ 20076408 (+) False LOC113528520
TU254301 other downstream 1370260 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 1371091 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 1371091 21341247 ~ 21348829 (+) False hopx

Expression Profile