RNA id: TU253520


Basic Information

Item Value
RNA id TU253520
length 2902
lncRNA type intronic
GC content 0.41
exon number 5
gene id G214098
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20071695 ~ 20181878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AagtatgcaaaaataaaacctttgagAACCCCTGGTTTATACCATAGCAGGCTTTCCATATCATACTCCTGCATTTAAGCATATTAACCTCAGAATGCAGAGTGTGGGTTTATGGGTAAATGTGGTGTGCAGAGGCACAATGATGTACTAACTTGATGTTCAAGCATGATGCACTTGTCAGATGGAGTGTGAGAAACAAGATGGTGGACACTAGCTCCTAGACTACTAGCCAAAACACTGAGCTTCTACTTCACCACCACAAACCAGTACCAACTGTAACACTGCTGCTATTGACCCGATCGGTTTGACACCCCCGGCTAATGTTCATACTACATagaaaagcgctatctgccctcttccacatacctgagctgacagatgcccacgattggctagtgtcgctgtgattgacgggAGAAACAGTACaacatccctcccacccagagagcatgggcaattttgctccctttgggtcctggccatggatggctatGGCATCGTTAGAATTCGAGCTCTCAATGACAGGCCGAACATCATTATAACATCTGTTCTAAACTGTAATACTTAAGCATAATCATTCATTCAAGAAATAGCTTTTCTTACCATGAGCATATTTGAGTTATCTGGCTTCCATATTAAGAATTTAACatagtttttaattcattaatgtttttgtaaatacCCAGAATGCTTTTGCGTGCTACTAACCAAATGGCACTTTTCTTCACATGAACCTCCTTTTGAACATTTCAGTAGGACAGAATATAAATTGcaaatacagcacacacacagcattgtgCATAAAAAGTGTTCAGCTTTATTTCCAtcatttattatctttatttttattattattattattattattattattattattattattatcattattaatcacATCCACTCCAGTGAAAAAGTGGAGGCTTATATTAACACAATAAACATACCCACAATGACGGAGACAGAGGACAGAACACCATTGTCTCTCtcgcgcacacatacacacacatacacacacgctaCAGTAAATCTCTGGACTGTTCCATTTCTGCTTTACAACCTATTATTGCTCcctgaacaaaacacacacagatcctcTCAGCAGAATGCAGAAACAGACCACGGTCCATCATATAAGCGCAAGatacagtaagagagagagctAAAGCAAAACCTCCACCTGGTTAACAATATGAGACCGATCCATGACATAGCGTCGTGTCTAAAACATGACAACTCCTTATGTAAGAGTGACCTTCATGTTAGATCAGGAGCTGTGCTGtttcagaaatgtgttttataacttcagactgtgtgtgttttgtgtgtgttttgtgtgtgtttgtgtgtgtgtttgtgtgtgcgcgcgcatgcGTGAATGCATGAATGTTGGCCAGATGGAGGTCTCACTCTCGCGCCTCTGGAATGTCACACCTTTCATAAAGATGAGAGATAAGGAGCATGTTAAccgactgaaggcagaaaggagacacacacacacacacacacacacacacacacacacacacacaaacacacagaggcagcTGAGATTACTGGCACACAACCCTTAAAAACAAAGAGAGCGAGCGTGCAAGtctaagtgagagagagagaaagactgattCCATACAGCAGTCCCTGTCCCTGCTGATCCtgcaagagtgtgtgagagtgcttAGATTTTTAGTGTCCACTGTTTCACACACGCATCGTGAGAGGTCGTGACGAGCGTGTGTTCATCCAGCCAGGCCAAGCTGCTGATGTGGTGCAATCGATGAGCATCTGcaacgcacacaaacacaaaaccacagGAAGGCCATTTGTAAATACCGTAATTGTACAAGTTGATGTAGCAGCCATTTTCATTTCCTAAAATctcctcacctcctcatcaaatatgtaaatattcctaaatttcaaatgaaaagTTTTTGATCTAACCCATATACGTTgttgaatttattaataatttagcaTTAGACAGAGTAGTACAAACAGGAATTAGACAGAGTAGTACAAACAGGAATATTACTATTAggataacacaaaaaaaacataatacactataaatttaaacaacaaaaaaaaaataataatcacgcATAGTCTGGAAAATATTAAGTGTACGTTTGTGTACCAGGAATTTTGATCCTATTGTCAGGATTGGAGGCAGTCCAGACATACACCATCATGTCCATTCCTCCAGAGGCAAAGTGATCATTATCAGGACTCCAGGACAGACATACCACTTTAGCATGATGCCCATAGAACTCGTTCTTaaccCGATAACCATCAGCAACGGTGTATACGATGATGACTTTCTTCTCGTTTGAGACAGCGAGGAATGCCCCATCTCTGGAATACTGCAGATCAGTCACAGGGCCTTTGGTGTCCAGAACCTTCCCATCATCCTTCAAGGTGTTCCCCTGGACTGAGTAGAGATACACATTtccatcctacacacacacacacacacacacacacacacacacacacacacacacacacacatatatatatatatatatattacacccCAATAATCCTTGGccaattttctttatatattttttaaacattatataaaatctaaaattatttatatgtataataaaCTTCAGTTAAGACGTCTTTGTCTCAGTAAGGTGAGGTTCCTTAGGGAAGCCGAGCCACTTGTAAAAGCTTCTTGTTGACAAGAAAATTGCAAGTGAAACTGAAGGTGgtaaaatatgcaaatcagaaaCAGAACTCAGTGGTTCCTTACAGCTCCGCCCACTGCCACGGTGCCACCCCCGGGATGAATCGCACCCACTTCTGGCTCATAGCCCAGATTATCCAGAGTGAACACTTTCCTCTTATCCTTCAACAGCACCACCTACAGAAAAGAAACATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253415 lncRNA upstream 171259 19968008 ~ 19970156 (+) True G214012
TU253387 lncRNA upstream 229040 19912139 ~ 19912375 (+) True G213984
TU253382 lncRNA upstream 229683 19873076 ~ 19911732 (+) False LOC113528458
XR_004579341.1 lncRNA upstream 348756 19784413 ~ 19792659 (+) True LOC117598770
TU253255 lncRNA upstream 425856 19698004 ~ 19715559 (+) True G213864
TU253575 lncRNA downstream 68809 20213406 ~ 20214427 (+) True G214144
XR_004579413.1 lncRNA downstream 119601 20264198 ~ 20393220 (+) True LOC113528473
XR_004579414.1 lncRNA downstream 119601 20264198 ~ 20374853 (+) False LOC113528473
XR_004579412.1 lncRNA downstream 119601 20264198 ~ 20327353 (+) False LOC113528473
TU253833 lncRNA downstream 326932 20471529 ~ 20471764 (+) True G214369
XM_026917105.2 mRNA upstream 138735 20000958 ~ 20002680 (+) True drd5a
XM_034310034.1 mRNA upstream 144482 19963720 ~ 19996933 (+) False zbtb49
XM_026917114.2 mRNA downstream 16361 20160958 ~ 20173352 (+) True LOC113528520
XM_026917116.2 mRNA downstream 17014 20161611 ~ 20173352 (+) False LOC113528520
XM_026917157.2 mRNA downstream 286044 20430641 ~ 20438868 (+) True leprotl1
XM_026917123.1 mRNA downstream 294844 20439441 ~ 20444946 (+) False LOC113528524
XM_026917122.1 mRNA downstream 294846 20439443 ~ 20444946 (+) True LOC113528524
XR_004579430.1 other upstream 65007 20022509 ~ 20076408 (+) False LOC113528520
TU253418 other upstream 160035 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 188129 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 231250 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 828197 19301355 ~ 19313218 (+) True gng13b
TU254301 other downstream 1195819 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 1196650 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 1196650 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 1196650 21341247 ~ 21348829 (+) False hopx
TU254299 other downstream 1196969 21341566 ~ 21348829 (+) False hopx

Expression Profile