RNA id: TU253575


Basic Information

Item Value
RNA id TU253575
length 364
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G214144
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20213406 ~ 20214427 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAGATGTAGGAATGCTCACGccattacaacacacacacacacacacacacacacataccatcgCTTCACGTTGATAGATCCcgtcagtaaacacacacacacgcacacacgcacacgtgtTCGTCCGGTTGTCAGATCAGAATAAATCACGCTCTTTTGTCCCGGGTCAAAGTTTTGATCGTCGGCTCTTTCCACTCGGACTTTCATTTGTATCAGCCAcaaggccacgcccactcagagAAAGGTCCGCGATTTCCTCCTCCCTGGCTATTTCCGGGATTTAAAGCACAGtgtgcgATTGTGTACCCGTCCAGGGTATCCACCACCTTGTGCCCTgggttccctgggataggctccaggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253526 lncRNA upstream 31528 20071695 ~ 20181878 (+) False G214098
TU253523 lncRNA upstream 60713 20141415 ~ 20152693 (+) False G214098
TU253520 lncRNA upstream 68809 20141415 ~ 20144597 (+) True G214098
TU253415 lncRNA upstream 243250 19968008 ~ 19970156 (+) True G214012
TU253387 lncRNA upstream 301031 19912139 ~ 19912375 (+) True G213984
XR_004579413.1 lncRNA downstream 49771 20264198 ~ 20393220 (+) True LOC113528473
XR_004579414.1 lncRNA downstream 49771 20264198 ~ 20374853 (+) False LOC113528473
XR_004579412.1 lncRNA downstream 49771 20264198 ~ 20327353 (+) False LOC113528473
TU253833 lncRNA downstream 257102 20471529 ~ 20471764 (+) True G214369
XR_004579420.1 lncRNA downstream 630714 20845141 ~ 20852594 (+) True LOC117598998
XM_034310264.1 mRNA upstream 40054 20022513 ~ 20173352 (+) False LOC113528520
XM_026917114.2 mRNA upstream 40054 20160958 ~ 20173352 (+) True LOC113528520
XM_026917116.2 mRNA upstream 40054 20161611 ~ 20173352 (+) False LOC113528520
XM_026917105.2 mRNA upstream 210726 20000958 ~ 20002680 (+) True drd5a
XM_034310034.1 mRNA upstream 216473 19963720 ~ 19996933 (+) False zbtb49
XM_026917157.2 mRNA downstream 216214 20430641 ~ 20438868 (+) True leprotl1
XM_026917123.1 mRNA downstream 225014 20439441 ~ 20444946 (+) False LOC113528524
XM_026917122.1 mRNA downstream 225016 20439443 ~ 20444946 (+) True LOC113528524
XM_026916633.2 mRNA downstream 532281 20746708 ~ 20779232 (+) True ankrd50
XM_034310040.1 mRNA downstream 797783 21012210 ~ 21013848 (+) False nudt6
XR_004579430.1 other upstream 136998 20022509 ~ 20076408 (+) False LOC113528520
TU253418 other upstream 232026 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 260120 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 303241 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 900188 19301355 ~ 19313218 (+) True gng13b
TU254301 other downstream 1125989 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 1126820 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 1126820 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 1126820 21341247 ~ 21348829 (+) False hopx
TU254299 other downstream 1127139 21341566 ~ 21348829 (+) False hopx

Expression Profile