RNA id: TU253634


Basic Information

Item Value
RNA id TU253634
length 1322
lncRNA type sense_over
GC content 0.30
exon number 2
gene id hs3st1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20205339 ~ 20213629 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttttcagtaatgtttGATTATAACGTGATTTCACAATTAGAAAATTCTCAGCTTATAAATCTGACATGATGACATGAAGGCACTGGTTACATAATGATATGCTCATAATGACTTAATCAGCTCTTAGGTGGAATTCCTTCatgttttttaatggaaaagttTCTCAAATATTGAATATAATGGTATCAAGTTTAAATACAAATCCACAGTGCACCTCTCCTTGAAATTATCTACACAAAGTGTGAACATTAAGTGGTTTCTTCTATGCTCAACACAAATAATGAGGCAGCgattaaagaaatataaagacATATTGGCTAATCTCTAACTGAAGCAGAACTCTGTAAACTGTCCATGTTCTGATATACTCACTGTAAAAAGCACAGGCTAAtgcacaaactagcattatagaaAACAGGCTAAtgcacaaactagcattatattaAACACGATAAagcaaactagcattatagaaCACAGGATAATGCACAAGCTAGCattattacagtaaacaggctaatgCACAAACttgcattatagtaaacaggctaaaacacaaattagcattataataaacaggataaaacacaaactagcattatagtaaacaggatAATGCACAACCTAGCATTATAGAAAAGAGGTTAAtgcacaaactagcattatagtaaacacgataaaacaaactagcattatagtaaacagtataaaacacaaattagcattatagtaaacaggctagtgcacaaactagcattatagtaaacaggataaaacacaaactagcattataagaAGGCTAAAATTTAAATCTGTATTATAGTAAACAGTTTATcttaaactagcattatagtaaattGACTAACCCTCAACCTAGAATAGCTAATCCCAACCATTATACCACACAAGCTCTGTATGTTTATTAGCCTTTTCAAAGCTGTTTTAACTTTTTGAATTCATTAACTGGCAAATGTATTTGTGACTACAGTCACagtgttaaaataaacacagctcaTTTGTAGTCTGTTTTATAAACTAGAATGAAATTAGATCAGTATTCTTGATAGCTGGCTACACGCAAGTTGCTAGTTGCTGATGAAACCGAATTCTGCAGTTCTAGTGCTTTTCATCAGTATTTATTCTCTATCTTAaacttttactgttagactgaGTCAGTGATTATGCTAAAATATGTATATGCTACACTGCATAagctaaatatatatttgtatttttatacagcagtagatttttattttttggatttaaaaaaataatctttctACATTAATGtgcattataaacatttctgaatttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253590 lncRNA downstream 149650 20020552 ~ 20056144 (-) True G214159
TU253468 lncRNA downstream 221645 19940354 ~ 19984149 (-) False lyar
TU253270 lncRNA downstream 542032 19663337 ~ 19663762 (-) True G213879
TU253100 lncRNA downstream 783379 19417184 ~ 19422415 (-) True G213716
TU252899 lncRNA downstream 1132809 19025072 ~ 19072985 (-) False G213549
TU253789 lncRNA upstream 228907 20436052 ~ 20438834 (-) True G214325
TU253795 lncRNA upstream 238378 20445523 ~ 20445748 (-) True G214331
TU253976 lncRNA upstream 571620 20778765 ~ 20781702 (-) True G214493
TU254012 lncRNA upstream 634286 20841431 ~ 20841634 (-) True G214526
TU254118 lncRNA upstream 692940 20900085 ~ 20904041 (-) False spry1
XM_026916092.2 mRNA downstream 10281 20177265 ~ 20195513 (-) False LOC113527919
XM_026916091.2 mRNA downstream 10281 20177265 ~ 20195513 (-) False LOC113527919
XM_026916090.2 mRNA downstream 10281 20177265 ~ 20195513 (-) True LOC113527919
XM_026916840.2 mRNA downstream 47407 20142877 ~ 20158387 (-) True wdr1
XM_026917284.2 mRNA downstream 67581 20039787 ~ 20138213 (-) True slc2a9l2
XM_026916169.2 mRNA upstream 135328 20342473 ~ 20374576 (-) True rab28
XM_026916170.2 mRNA upstream 136878 20344023 ~ 20374576 (-) False rab28
XM_026916964.2 mRNA upstream 176612 20383757 ~ 20386625 (-) True nkx3-2
XM_034310025.1 mRNA upstream 187539 20394684 ~ 20400475 (-) True LOC117598840
XM_034309810.1 mRNA upstream 193335 20400480 ~ 20412128 (-) True bod1l1
TU253598 other downstream 142304 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 757460 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 1129454 19076269 ~ 19076340 (-) True trnat-cgu_6
TU252457 other downstream 1828431 18376077 ~ 18377363 (-) False LOC117598999
TU252076 other downstream 2352155 17828167 ~ 17853639 (-) True tsen54
trnal-aag_9 other upstream 205704 20412849 ~ 20412930 (-) True trnal-aag_9
TU254170 other upstream 807294 21014439 ~ 21027259 (-) True fgf2
LOC113546932 other upstream 1465017 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 1465677 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 1468493 21675638 ~ 21676807 (-) True LOC117598868

Expression Profile