RNA id: TU253789


Basic Information

Item Value
RNA id TU253789
length 2465
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G214325
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20436052 ~ 20438834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTTAGATATAAGCAGCTTAGGACGTCTAGTTGAAACACAAGTTTAAACAAGCAAagtatttgaaatgaaacatttacagCACTTTGGATTAACTAGAAATGtgtgaattcttttttttttattattattattttgcatgtaGCTAATAAACTAAACTCTAGATGACTTCAGAGGCTTATCCTTCATTTTGACTCATAGTCGGGtttaaaagtctgagaccaaaAACTGAATTTATTCCAAAAACGCTGGACAGTACaagcccacaagagacaaattGCAAGTGACACATCAGCGACTTGTCACTTCCCAGtgtgaataaaaacagttcttggtgGTTTTGGACTCCgactatacacacacagaattggCCGACATTGCTGAATGAAAGTACCTTTTGGCGAATGTGACACTCGACCTTATCGTAGGACAAATGGCtgataaatacattaaaataatttatcaaCTTGCAATAAGTCAGTTTCTTACATGGTTACAGTTACACAGTACAGTAACAgaggaagaaataaataatatgaaaaaaaaataaacatgtaacaAATTATTCAGTGCTTCTAAAAGTTTTGAGACTCAACTTTTGTCacctaaaaaaaacaggacttcACATTAATGGTTTTGAAGAGAAAAGTCAAACTAAATTGAAAAATTTCTCCCCACACcttcagtaattcagtaagCTAAGCCATGTTGCGTCCAAATTTTCTTTAGTATTCGCAAAGAGCTACAAAGCTAATAAAGCTAACAAGTAATAAATGCCTATGAATACAGATTAGCATACAGCTAACTCTGCTGAAACTGTCACGCTTACCTCTGAGGTAAATTACAGACAAGTTTCTGAAATTCTTGTTACTTGCTGTTtgaagtgagtgtgtaagtATTTCAGGATACAGTTAGCATAATGCTAATCTttctcatagctccagtgcacaAAACATTTAGACTATAATGATCAGCATCATGCTAACTTCGTAACTGCGTTTTTACCTCAGTGTTAATCTTAAACAGTCTTGCTTATATGTTGCTGACACAAAATTATCTCACAGCTGAAAACAATAtcggcagccattttgaaacAGAATTACTTACTCTTATTGATATATTAAAATCTCACTTTACTCACTTTCACTCACAAAAGACTCACTTTACAACTATATGAAATAGTGTATGTGCTAACGCTACTACATAAAGCTATTTGAAGTGTGTGACGTTTTCAGAGCACAGTTAGCATAACGCTAATCTACGTCACACCTCCAGTACAAACATTTAGACTAGAATAATCACTTTTTACCTCAGTGTTTTTTACCTCAGTCTTAAAGACTTGCTTATAGGGTGCTGACAAAATTACCTTAAAGCTGAAAACAAtagtggcagccattttgagaCAGGATCACttattattattattatatatttatatttgtaaatacgGACTCACTTTACAACTACATGAAATAGTCTATGTGCTAATGACGCCATTTGAAGCGAGTGGGATGATTTCAGAATACGGTTAGCATGATGCTAGTCAGTGCTCAGTTACTTGTTAGCAAAGTGAGCTTTGTAGCTCCTATACACAAAGTTTTATTCGATTACAATTTAATCTCAAACACTGGCTGTGTACTGAGCATTATACAGGGTATCGCTACTAAATTGCGAGATTATACATTAAACAGCAGCAATGGTTCTGGCGTTTGGTTATGGGATGGACTTGTGCTACCTATAATGCAATGGTGGCAGTAGACAGTGCATTTTACGTGAATAAATTATAACTAAACCCATGTAACTTGAAAAGGCAAttcacttttaaaatattacacagcAGATTCACCAAGCTAAAGACTAATGCTAAAGGATGCGCTCCAAATCACAGAGTCTGTGATTAGCTCTAACCACAGACTTCATAAAGAGAATTATCTATCCATATTagctcatttttttctgtggtattatacattttacattctgtAGAGAAGCGTCGATCATGCCtgcaagaaggaaaaaaaaaactagaaacattgctaatgcacaaaataaacagaaaaaacaacagctttCTGAGGTCAAACCGATCCCAGTGACAACTTATTGCACTGATTTCCTCTTAATACGGATGGCCAGtcactataaataataacaaagacGACAATAAGAACCACGACAATAGCCGTGGTAAGAATGTATGTTGGTAAAAACAGTTCTCCGCTTCACCACTGCTGCCAGCTGAAGTCGTCGTTCGACCCAAAGACGAGGAAAAAGCCCAGAATGGTGCCAAAAATGACAATGTTTCCTGTCAGGACGAGAGCGCAGGCCCCCCAGGCAATctgcacacacaaatattaattatttacgCAACAAATGGCACTAAACACACAACGCAGATGAGACCAtgcttcattctgattggtcataatTTTGCTGTGGTAAAGTAGAAAAAGGAAgaagtctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253634 lncRNA downstream 228907 20205794 ~ 20207145 (-) False hs3st1
TU253590 lncRNA downstream 379908 20020552 ~ 20056144 (-) True G214159
TU253468 lncRNA downstream 451903 19940354 ~ 19984149 (-) False lyar
TU253270 lncRNA downstream 772290 19663337 ~ 19663762 (-) True G213879
TU253100 lncRNA downstream 1013637 19417184 ~ 19422415 (-) True G213716
TU253795 lncRNA upstream 6689 20445523 ~ 20445748 (-) True G214331
TU253976 lncRNA upstream 339931 20778765 ~ 20781702 (-) True G214493
TU254012 lncRNA upstream 402597 20841431 ~ 20841634 (-) True G214526
TU254118 lncRNA upstream 461251 20900085 ~ 20904041 (-) False spry1
TU254119 lncRNA upstream 464264 20903098 ~ 20903837 (-) True G214626
XM_026916811.2 mRNA downstream 5537 20426759 ~ 20430515 (-) True LOC113528321
XM_034309805.1 mRNA downstream 11380 20419758 ~ 20424672 (-) False tmem107
XM_026916948.2 mRNA downstream 11380 20419762 ~ 20424672 (-) True tmem107
XM_026916159.2 mRNA downstream 17671 20414100 ~ 20418381 (-) True aurkb
XM_034309810.1 mRNA downstream 23924 20400480 ~ 20412128 (-) True bod1l1
XM_026917292.2 mRNA upstream 168790 20607624 ~ 20697160 (-) True LOC113528637
XM_026916521.2 mRNA upstream 461223 20900057 ~ 20905271 (-) True spry1
XM_034309906.1 mRNA upstream 465690 20904524 ~ 21003470 (-) False spata5
XM_034309907.1 mRNA upstream 470121 20908955 ~ 21003477 (-) True spata5
XM_034309908.1 mRNA upstream 470121 20908955 ~ 21003471 (-) False spata5
trnal-aag_9 other downstream 23122 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 372562 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 987718 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 1359712 19076269 ~ 19076340 (-) True trnat-cgu_6
TU252457 other downstream 2058689 18376077 ~ 18377363 (-) False LOC117598999
TU254170 other upstream 575605 21014439 ~ 21027259 (-) True fgf2
LOC113546932 other upstream 1233328 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 1233988 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 1236804 21675638 ~ 21676807 (-) True LOC117598868
TU254923 other upstream 1237437 21676271 ~ 22215359 (-) False G215187

Expression Profile