RNA id: TU253833


Basic Information

Item Value
RNA id TU253833
length 236
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G214369
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20471529 ~ 20471764 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAACCCGTTTTGCGTCATTCTTCATCATTCTCAGACTAAAACACCGGAAAATAATCTTATAGaacactgtttttaaatgttaatagataatagcgtctgctaaatgaataaatgttactgtattaaTTTCACCCTTGTGGGCAAAGGTGCACTGCCCCAGGCACTAGCCACCCAGAGCACGTACTAATACTACAGTGGGATTTGAAGAGAAATTGATGAAGAATTACGCAAAAC

Function

GO: NA

KEGG:

id description
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579413.1 lncRNA upstream 78309 20264198 ~ 20393220 (+) True LOC113528473
XR_004579414.1 lncRNA upstream 96676 20264198 ~ 20374853 (+) False LOC113528473
XR_004579412.1 lncRNA upstream 144176 20264198 ~ 20327353 (+) False LOC113528473
TU253575 lncRNA upstream 257102 20213406 ~ 20214427 (+) True G214144
TU253526 lncRNA upstream 289651 20071695 ~ 20181878 (+) False G214098
XR_004579420.1 lncRNA downstream 373377 20845141 ~ 20852594 (+) True LOC117598998
TU254014 lncRNA downstream 373383 20845147 ~ 20845347 (+) False LOC117598998
TU254040 lncRNA downstream 437064 20908828 ~ 20926678 (+) True G214548
TU254148 lncRNA downstream 540010 21011774 ~ 21024087 (+) True nudt6
TU254190 lncRNA downstream 673056 21144820 ~ 21158088 (+) False G214694
XM_026917123.1 mRNA upstream 26583 20439441 ~ 20444946 (+) False LOC113528524
XM_026917122.1 mRNA upstream 26583 20439443 ~ 20444946 (+) True LOC113528524
XM_026917157.2 mRNA upstream 32661 20430641 ~ 20438868 (+) True leprotl1
XM_034310264.1 mRNA upstream 298177 20022513 ~ 20173352 (+) False LOC113528520
XM_026917114.2 mRNA upstream 298177 20160958 ~ 20173352 (+) True LOC113528520
XM_026916633.2 mRNA downstream 274944 20746708 ~ 20779232 (+) True ankrd50
XM_034310040.1 mRNA downstream 540446 21012210 ~ 21013848 (+) False nudt6
XM_026917161.2 mRNA downstream 563496 21035260 ~ 21044307 (+) True dele1
XM_026916764.2 mRNA downstream 575497 21047261 ~ 21082014 (+) True LOC113528291
XM_026916765.2 mRNA downstream 575497 21047261 ~ 21082014 (+) False LOC113528291
XR_004579430.1 other upstream 395121 20022509 ~ 20076408 (+) False LOC113528520
TU253418 other upstream 490149 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 518243 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 561364 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 1158311 19301355 ~ 19313218 (+) True gng13b
TU254301 other downstream 868652 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 869483 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 869483 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 869483 21341247 ~ 21348829 (+) False hopx
TU254299 other downstream 869802 21341566 ~ 21348829 (+) False hopx

Expression Profile