Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU254040 |
| length | 431 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G214548 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 20908828 ~ 20926678 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579420.1 | lncRNA | upstream | 56234 | 20845141 ~ 20852594 (+) | True | LOC117598998 |
| TU254014 | lncRNA | upstream | 63481 | 20845147 ~ 20845347 (+) | False | LOC117598998 |
| TU253833 | lncRNA | upstream | 437064 | 20471529 ~ 20471764 (+) | True | G214369 |
| XR_004579413.1 | lncRNA | upstream | 515608 | 20264198 ~ 20393220 (+) | True | LOC113528473 |
| XR_004579414.1 | lncRNA | upstream | 533975 | 20264198 ~ 20374853 (+) | False | LOC113528473 |
| TU254148 | lncRNA | downstream | 85096 | 21011774 ~ 21024087 (+) | True | nudt6 |
| TU254190 | lncRNA | downstream | 218142 | 21144820 ~ 21158088 (+) | False | G214694 |
| TU254189 | lncRNA | downstream | 230604 | 21157282 ~ 21158088 (+) | True | G214694 |
| TU254221 | lncRNA | downstream | 236222 | 21162900 ~ 21163304 (+) | True | G214723 |
| TU254231 | lncRNA | downstream | 258588 | 21185266 ~ 21186303 (+) | True | G214731 |
| XM_026916633.2 | mRNA | upstream | 129596 | 20746708 ~ 20779232 (+) | True | ankrd50 |
| XM_026917123.1 | mRNA | upstream | 463882 | 20439441 ~ 20444946 (+) | False | LOC113528524 |
| XM_026917122.1 | mRNA | upstream | 463882 | 20439443 ~ 20444946 (+) | True | LOC113528524 |
| XM_026917157.2 | mRNA | upstream | 469960 | 20430641 ~ 20438868 (+) | True | leprotl1 |
| XM_026917116.2 | mRNA | upstream | 735476 | 20161611 ~ 20173352 (+) | False | LOC113528520 |
| XM_034310040.1 | mRNA | downstream | 85532 | 21012210 ~ 21013848 (+) | False | nudt6 |
| XM_026917161.2 | mRNA | downstream | 108582 | 21035260 ~ 21044307 (+) | True | dele1 |
| XM_026916764.2 | mRNA | downstream | 120583 | 21047261 ~ 21082014 (+) | True | LOC113528291 |
| XM_026916765.2 | mRNA | downstream | 120583 | 21047261 ~ 21082014 (+) | False | LOC113528291 |
| XM_026916767.2 | mRNA | downstream | 135236 | 21061914 ~ 21082014 (+) | False | LOC113528291 |
| XR_004579430.1 | other | upstream | 832420 | 20022509 ~ 20076408 (+) | False | LOC113528520 |
| TU253418 | other | upstream | 927448 | 19978314 ~ 19981380 (+) | True | G214015 |
| XR_004579366.1 | other | upstream | 955542 | 19933824 ~ 19953286 (+) | False | LOC113528304 |
| TU253379 | other | upstream | 998663 | 19906202 ~ 19910165 (+) | False | LOC113528458 |
| XR_004579333.1 | other | upstream | 1595610 | 19301355 ~ 19313218 (+) | True | gng13b |
| TU254301 | other | downstream | 413738 | 21340416 ~ 21349086 (+) | True | hopx |
| TU254300 | other | downstream | 414569 | 21341247 ~ 21348829 (+) | False | hopx |
| TU254302 | other | downstream | 414569 | 21341247 ~ 21348829 (+) | False | hopx |
| TU254303 | other | downstream | 414569 | 21341247 ~ 21348829 (+) | False | hopx |
| TU254299 | other | downstream | 414888 | 21341566 ~ 21348829 (+) | False | hopx |
