RNA id: TU254118


Basic Information

Item Value
RNA id TU254118
length 841
lncRNA type sense_over
GC content 0.39
exon number 2
gene id spry1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20900057 ~ 20905271 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTCTTAAAGCACCCACATATATTCCTTACGTTTATACCACTTTTTAACTACCTGTTTATGCTTTATGATCCCCCTTTCCATCTGTTTTTACCCCCTCCTCCCCAGTCTCTCCGGCTCATCCCGGgccccaggtttttttttttttttttaacaaaaccagTGTTTGCCTTAAACTGACTGCGGGTCTGCTCAGCTACTCGATAAAGAGAcaaagtgaaaaggaaaaaaaaaaagagagaacagacAGAAGAAGAAATTTTTAAGTAAACGAGAGAGACATACCGAACCGAATCTGTGAAGGACTGTCCGGCCAGCCCATAATACTGTAGCTGTTCCCAGATCGCCGTAGCAACCTGGTATTGTTCCCACACAGAGGGCTTCCCGTGCCTTCCCGCGGGTCGTCTCCGTGGAAACGACCCCTCCGTCTGGTAGTGTTTCCGGACGGACAGACGGGTGGacgttcaaacacacacacacaaacacacacacgtacacacactccGTGGCATTCTGACATTatggttttttgttgttgtttgttgtttttattgttttgttttctctccccttttctcatatttttgtaaaaaaaaaattgtatgttCAAATCCATCAGAGGAATCCtggctattttttaaaaagttacaaaaaagaaaatgtctgtttaaaaacatttgtttttgtcattgtaaaaaaaaatatttattaagtgaagctctattattttatgatatttattgcGAAACAAAGACAGTCTTAGATTTACTCATGTCTGAATATAACAGAAATATCAATACTGAGAAATTAAAGGGTGACACAAACGTTATGTTAACTTTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254012 lncRNA downstream 58451 20841431 ~ 20841634 (-) True G214526
TU253976 lncRNA downstream 118383 20778765 ~ 20781702 (-) True G214493
TU253795 lncRNA downstream 454337 20445523 ~ 20445748 (-) True G214331
TU253789 lncRNA downstream 461251 20436052 ~ 20438834 (-) True G214325
TU253634 lncRNA downstream 692940 20205794 ~ 20207145 (-) False hs3st1
TU254389 lncRNA upstream 332767 21236808 ~ 21257851 (-) False slc16a2
TU254391 lncRNA upstream 332817 21236858 ~ 21244785 (-) False slc16a2
TU254446 lncRNA upstream 423619 21327660 ~ 21329675 (-) True G214917
TU254466 lncRNA upstream 449965 21354006 ~ 21356874 (-) False LOC113528016
TU254470 lncRNA upstream 455656 21359697 ~ 21359899 (-) True G214933
XM_026917292.2 mRNA downstream 202925 20607624 ~ 20697160 (-) True LOC113528637
XM_026916811.2 mRNA downstream 469570 20426759 ~ 20430515 (-) True LOC113528321
XM_034309805.1 mRNA downstream 475413 20419758 ~ 20424672 (-) False tmem107
XM_026916948.2 mRNA downstream 475413 20419762 ~ 20424672 (-) True tmem107
XM_026916159.2 mRNA downstream 481704 20414100 ~ 20418381 (-) True aurkb
XM_034309906.1 mRNA upstream 483 20904524 ~ 21003470 (-) False spata5
XM_034309907.1 mRNA upstream 4914 20908955 ~ 21003477 (-) True spata5
XM_034309908.1 mRNA upstream 4914 20908955 ~ 21003471 (-) False spata5
XM_034309905.1 mRNA upstream 4914 20908955 ~ 21003470 (-) False spata5
XM_034309909.1 mRNA upstream 38371 20942412 ~ 21003471 (-) False spata5
trnal-aag_9 other downstream 487155 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 836595 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 1451751 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 1823745 19076269 ~ 19076340 (-) True trnat-cgu_6
TU252457 other downstream 2522722 18376077 ~ 18377363 (-) False LOC117598999
TU254170 other upstream 110398 21014439 ~ 21027259 (-) True fgf2
LOC113546932 other upstream 768121 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 768781 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 771597 21675638 ~ 21676807 (-) True LOC117598868
TU254923 other upstream 772230 21676271 ~ 22215359 (-) False G215187

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_00399845_00400761.mRNA True 1469 mRNA 0.51 2 CI01000046 399189 ~ 400812 (-)