RNA id: TU254190


Basic Information

Item Value
RNA id TU254190
length 548
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G214694
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21144820 ~ 21158088 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttttttttttttatttttttttttttttttaatttttttttatttgtatttatttgatttactgGCATCGTAGAAATGGGATTCCACATAAAAGAGCTTGAATGATTGTGCAAAATGGAGGAGGGAGCAGTATGGGAATGTCCAGCACTGTGGTAAGAATCACATGATCAGTATGAGGAGGATACAGAGGATGACAATGATAAAGGGGAGAAATAGGGAATACTGTTGAGGGAAAGGTACACTTAACTCAAAAAGgtgaaaaagaacaacaaaaagtgTGAGAAGATGGAAAGATGAAGGAGTGAGAGTTTAGGAAAAGACTGTAATttcagatggagagagagaaagatggaaggGACACGTAAATGCAGTGTGTTGGGTGGGGAATCAAGGTGCAATATTTCCATACAGGAAGTGAATCCGACTTGGACATGGGCGGAGTCAAGGGTGTGGGTGGTGAACAGGGTGCTGTAGGTTCAGTTGCTAAGCAACAACTCCGTTGCCGTCTCCACATCCCAGGATTTTGACGACAATGCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254148 lncRNA upstream 120733 21011774 ~ 21024087 (+) True nudt6
TU254040 lncRNA upstream 218142 20908828 ~ 20926678 (+) True G214548
XR_004579420.1 lncRNA upstream 292226 20845141 ~ 20852594 (+) True LOC117598998
TU254014 lncRNA upstream 299473 20845147 ~ 20845347 (+) False LOC117598998
TU253833 lncRNA upstream 673056 20471529 ~ 20471764 (+) True G214369
TU254221 lncRNA downstream 4812 21162900 ~ 21163304 (+) True G214723
TU254231 lncRNA downstream 27178 21185266 ~ 21186303 (+) True G214731
TU254255 lncRNA downstream 40454 21198542 ~ 21244785 (+) True G214753
XR_004579331.1 lncRNA downstream 198762 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA downstream 198762 21356850 ~ 21359059 (+) False LOC117598756
XM_026916764.2 mRNA upstream 62806 21047261 ~ 21082014 (+) True LOC113528291
XM_026916765.2 mRNA upstream 62806 21047261 ~ 21082014 (+) False LOC113528291
XM_026916767.2 mRNA upstream 62806 21061914 ~ 21082014 (+) False LOC113528291
XM_034309853.1 mRNA upstream 62806 21061916 ~ 21082014 (+) False LOC113528291
XM_026916768.2 mRNA upstream 62806 21061916 ~ 21082014 (+) False LOC113528291
XM_026916808.2 mRNA downstream 23325 21181413 ~ 21184850 (+) True tlr1
XM_026916778.2 mRNA downstream 48371 21206459 ~ 21226848 (+) True f8
XM_026916148.2 mRNA downstream 130392 21288480 ~ 21293794 (+) True LOC113527948
XM_026916510.2 mRNA downstream 143555 21301643 ~ 21328754 (+) True sec24b
XM_034309781.1 mRNA downstream 183101 21341189 ~ 21348917 (+) False hopx
XR_004579430.1 other upstream 1068412 20022509 ~ 20076408 (+) False LOC113528520
TU253418 other upstream 1163440 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 1191534 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 1234655 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 1831602 19301355 ~ 19313218 (+) True gng13b
TU254301 other downstream 182328 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 183159 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 183159 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 183159 21341247 ~ 21348829 (+) False hopx
TU254299 other downstream 183478 21341566 ~ 21348829 (+) False hopx

Expression Profile