RNA id: TU254231


Basic Information

Item Value
RNA id TU254231
length 917
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G214731
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21185266 ~ 21186303 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCTGATTTCAATTACTGCCAAATCAAGTAACATTTCCATGTTTATTAGATAACCAAACAACAGACATTACCAAGCAATGCAGTTTCCTGTCAACATAACTACTTGGACATAGACACCGTAAGAAGACTGAGAGGTTCTTCATAGGACAGGATGCAACTAGTGCAACCAATTAGTCGAACGTTTGCAATATGCAATTTCACAAGCTTTAACAGGGAAATATACCAGAATCCATTACCCCGTTAAAAGTAAGACACTCCTGTTTGAGGTCTCTGCACTTATCCAAAATAGGCAACTCTAAACCTAGACAATTCACAAAGGCTACAAAAGTCAATAGTAAACAGTATCAAGTTGAAAAATAAGTTTTTCTCACAAATGTTGCAAATTCAGCAAGAATTAGGGCATAGGGCagaattcaaatgaaaaattcCTCCCTGAAacaaattatatatgtatataggaTACATAGAATAATGGTTAGATTTTGTTGTGAGCTCCTAAAAACACCAGGTTTGTCATATTAATGACAAATCCAATGTACATACAGTGGGGacagttccagaatgcaatgcagctacatGGCCCAGTTGAGCGGAGTTACGGCAGAGACTCTGCTCAGTTAGTTAGCGATCTAGGAGATGACGAGTGCAACAGCATTGAaagtggtattagcatgaaagctttgCGTTGCTGAAGATTGtgataattataaagattaatatggaAGTTATATagggtggatttttccattAAGTGTCCAAGGTCAGGGTAAGGACTGGATGAGGATGATTTTCTCATTAATGCAGAATCGATGTAGCACGCCGAGTAGATTTTCTCCGCAGCGAGACACCTGGCGCTCCATCGCTAGCCGGAAATCTTCTTTCACCCCCTTGGTAATGCCACGAGTCACAGTGTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254221 lncRNA upstream 21962 21162900 ~ 21163304 (+) True G214723
TU254190 lncRNA upstream 27178 21144820 ~ 21158088 (+) False G214694
TU254189 lncRNA upstream 27178 21157282 ~ 21158088 (+) True G214694
TU254148 lncRNA upstream 161179 21011774 ~ 21024087 (+) True nudt6
TU254040 lncRNA upstream 258588 20908828 ~ 20926678 (+) True G214548
TU254255 lncRNA downstream 12239 21198542 ~ 21244785 (+) True G214753
XR_004579331.1 lncRNA downstream 170547 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA downstream 170547 21356850 ~ 21359059 (+) False LOC117598756
TU254313 lncRNA downstream 181721 21368024 ~ 21368228 (+) True G214798
TU254315 lncRNA downstream 220070 21406373 ~ 21464629 (+) True G214800
XM_026916808.2 mRNA upstream 416 21181413 ~ 21184850 (+) True tlr1
XM_026916764.2 mRNA upstream 103252 21047261 ~ 21082014 (+) True LOC113528291
XM_026916778.2 mRNA downstream 20156 21206459 ~ 21226848 (+) True f8
XM_026916148.2 mRNA downstream 102177 21288480 ~ 21293794 (+) True LOC113527948
XM_026916510.2 mRNA downstream 115340 21301643 ~ 21328754 (+) True sec24b
XM_034309781.1 mRNA downstream 154886 21341189 ~ 21348917 (+) False hopx
XM_026916224.2 mRNA downstream 154994 21341297 ~ 21348917 (+) False hopx
XR_004579430.1 other upstream 1108858 20022509 ~ 20076408 (+) False LOC113528520
TU253418 other upstream 1203886 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 1231980 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 1275101 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 1872048 19301355 ~ 19313218 (+) True gng13b
TU254301 other downstream 154113 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 154944 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 154944 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 154944 21341247 ~ 21348829 (+) False hopx
TU254299 other downstream 155263 21341566 ~ 21348829 (+) False hopx

Expression Profile