RNA id: TU254247


Basic Information

Item Value
RNA id TU254247
length 3795
lncRNA type sense_over
GC content 0.35
exon number 5
gene id LOC113540569
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21514573 ~ 21565376 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTCTGATTTAAACACACTCCCTCAACTGGAGAACGGGAACAGCACTCTCACACTGAATAAAGATCATCATGGAAAAGTCACCTGCCGTGTAGAAAATCATGTCAGCTATAGCAACAATACCACTGAACTCCACCCATGTCCTGAACTCACTCTGATTAtcctgagctcagtttgtgTGCTTCTCATCATGATATCCATCTTAGCATTCTACATATACAAGAAGAGACAAGGCCAAAAGAACAAAGAAGCCCCTTCTCAGGATGACAGGGAGCTTGTGTACGCGCAGGTCACACATCTACCCACAGGACAGGACAGAGACAAGACCCAGGATGTCCCAAGCTCAAGATGATGATGTGGAGTATGCTATGGTGGTCACACAAACGAGCAAgaggaagcagaagaagaaagaagatgaGGTGCAGTATGGCGAGCTGGTATTTAACACTCCAGAGAAAAACAAGCCCAAAGTGCAAGACGATTGTGTGTACTCACAGGTCCAGAATAGTCGGTGAGGGacacagattattttttttattcagcaaCAAATTGGAGCTTAAATATCTAAAtactgtctttttaaaaatgtaactagACTTATCCATTTGTATTTTGCAAGATCATTCTGGTAGAGGAAGTAGCTACTGGAGATATTCCACCCATACACACTCATCTCTTACCCAAAATAAAACTACACCGACCGTGaagttaaaatatttcaatatttgaaTATGTGATTATTGAATCTTTTTAGACAGCACAGTCCATTCTactaggataaagcagctactaCTTTGTTCACTATAAAAAAACTCTGTGTTGAGTGCTGGGTTCAAAGTTAGTGTTAGCTGCAtaaaaaatgttcctttttcACAGATACACTTTTGCTATCACCATTGCTATCGTTCATTTTTTGTGCACTCGTATCTGCACTCAATTCCACATTAGTGCCTTTATTAAGAGCTGAAAATATACTGAATCCAATAAGATTAAGACAACCTTTTAAGAAGTTCCTCTTACGCAGCAATAATTTTTtgacgattacaattttttatttattaaagaatggcatacttttttttttctataatgtGTGAAACAGTTTGTCACACATTATAACATCTATAAACAGTCCCTCACTGTTCCAtcactttcttttgaagctaataagaaaaaaacaaatgaagtttGTCATATTACAGGAAAACTAGAAAGCACAATGTCCTCCGTTTTTAGAATTTAACCACaaaaaacttaaacttacaggTTTATCTCAGATTGTTACAAAGAggtgatactggagactcctgaAACTACtgattgtatgtttttctttgtaaatagcatgtttttttttaattatttatttattattagacttagattatgtggattgTCCAACaaaaaagtccctgtgaatgaaaaaAGCATATTAGAActagtgtgttaatataaaccttacagCCGTAATTACAGTCAGAtaaatcagaatagagaattccaCAGCAAAGTATTAGATAGTACtgaaaaattttacaaaaattgaTGATATTAAGATTAAGATATTTTCCCCTGCtatgatactttttttttttgcagtgaagagATTTCCAATAAAATCGCAAGatgctttaaataaaagtacaataccAATACGAAaattaagcaaataaaataataaaaaaaattgctagtTGGTTTCATGTaaatgctgtctctctctggacattgatttttattttttatttagctatgcatttttatttctatatatatatataatatgtaaataaagttagtAGCCATCACATTTCTTCTATATTTCCTCTCCCACCTGTGAACACACGCCTGCATTCAGGATGAACCTTAAGCATGAGAAACGCTTCTGAGGCTATTTTTtatgagtattattattaataggaGTATTTCAGTTTTTAGCAGTATTGTTTCAGTATTGTATTGTTGAGGAGAAAATAAAtaggaaggttttttttgttacagttttCAGCACTGAGCTTAACAGACAGCTATGACTTTTGCATTCAGCCTGTACACTTCTTTATTTCACGTGcttttgcaagaaaaaaaggGGAAGTCTGAATTACTCCATTTTTTCCAACTAACATTTCTGATTCTCTGTCACGAGTGTCTTAAAAAACCGCCGTCTTGGTTTTGTGATGAAGTTCTGTACATAAGAAATCTGAGATTATTCCATGAGGTTCTTGTCTACTATTTAGAAAATGTAACTTGGATCAAATAAATGATTTTCTGGCTTATGATGTGTAAAACagtggtggtttagtggttgatttaaatgtttgtgtctTTTATTGTGTTTCTTTCAAAGTTTGAAAAGCTTTAGGAATGATGAACCATGAACATGtgtaattgtattttatagttGAATTcttgtatttattacatattctTCTTACTGTTTACTATTCATTACAATATACATCTTATGTGGTAGCTACTTATCAATGTACTACCATTCACTCTTGAACTGTGAAACAGCTAACAGGTAGTGAAGTCTAGCTCACTTAAAATCTCTTTggggcatgctattataggaaagtaatcaacgacAGTGGTGTGGTATGGTATGGTGCAGTGGTATGGCCATAGATTTTGAcaagcattgattatttttctattcttctattgtggcagttgtatacagtgttttactattaaaaaaagctttagttgtgctgtccaTTGTTTTCTCAgtaccaatgttattgtggagaggtgtgaattgtttgcccagcagagTGGCTCagacccctcccctttcccatcaccctgctcaccagcagctaaacttAGAGTcgtgatactctacacacagaaacccaacagtgtcctgactaatatTATAACAGCCTTgtcacaaatgaattactggacattttcaatcagtataaacaaataagtCGAATTCCATTATGCTGGTGGAATAGAATGCCGGCGTACTGTGAGAAAGGGTTTAGGGACCACAGCCTTTACTGCTAACCTAACAGATCCTTATCACTGATATCAATTTTAGAAGGATATTACTCATGACTTGTTTCCGTTGTGGGCTGTGCAGTTATCTCGGGGGCTGTTAAAATTAGCCCCTTATCTGAACTTCAATCAAAAGTGCATGTACAAGTTATACATCATCTATGACTTCAATAAGTCCAAATAATCGTTGGTAGAAAATACTTCAGTGACTGTACTTTGTTACTCTACTTAAGTATTTTTTTGGAGGGGATTTATACTTAAccattattgaaattgaatacagTACTCTTACCTAATTATAtctcttaattaaaaaaaaatacttatgtttttatttagatctTCAATGTACTTAAGAATCAAAATCATGTTGTATCACGTGGAAGCCTGCTAAATACATAGGCAGGAGCTTTCCTGCTGCTGAGATCAGAGTCAGCCAATTCAATAGTGCTCTTtctgtaaatttgtaaatgtgtttgtaCATATGGATGTATTGTATTGTCAATTTCAAACTTGTAggtttgtattatattgtaataattGATGGAAAACATATTTCTTTAACTCTTCAGAGCCTGTGTTATTATATTTGCTCTTGAATAAAGCGGTGTTGTCTTACAATGTAGTGGTACAAGAGAGGGGCTGGGGTGATTTACATGCTctggaaaactaaaaaaaaaaaaaagatcaacacATTCGCCCACATATGCAAACGTGCCCATGCAGACCTGCTGCCAGTGACACATTCAACAAATGTGTGAGATTACTGATCAAGGCATACGGAGAG

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:2000145 regulation of cell motility biological_process
GO:0002521 leukocyte differentiation biological_process
GO:0032879 regulation of localization biological_process
GO:0002573 myeloid leukocyte differentiation biological_process
GO:0016477 cell migration biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0051270 regulation of cellular component movement biological_process
GO:0040011 locomotion biological_process
GO:0040012 regulation of locomotion biological_process
GO:0030334 regulation of cell migration biological_process

KEGG:

id description
ko04664 Fc epsilon RI signaling pathway
ko04666 Fc gamma R-mediated phagocytosis
ko04670 Leukocyte transendothelial migration
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254249 lncRNA upstream 1589 21551549 ~ 21556401 (+) True G214747
TU254327 lncRNA upstream 44950 21512571 ~ 21513040 (+) False LOC113540568
XR_004579360.1 lncRNA upstream 52204 21502137 ~ 21505786 (+) True LOC117598827
TU254324 lncRNA upstream 83027 21474633 ~ 21474963 (+) True G214807
TU254320 lncRNA upstream 91264 21447993 ~ 21466726 (+) True G214804
TU254342 lncRNA downstream 51719 21617095 ~ 21617294 (+) True G214825
TU254346 lncRNA downstream 69475 21634851 ~ 21635074 (+) True G214829
TU254607 lncRNA downstream 90885 21656261 ~ 21656835 (+) True G215042
TU254625 lncRNA downstream 152316 21717692 ~ 21718076 (+) True G215055
TU254629 lncRNA downstream 159235 21724611 ~ 22137078 (+) True G215059
XM_026937154.2 mRNA upstream 11898 21541990 ~ 21546092 (+) True LOC113540583
XM_034309850.1 mRNA upstream 11898 21541990 ~ 21546092 (+) False LOC113540583
XM_034309842.1 mRNA upstream 35991 21514573 ~ 21521999 (+) False LOC113540569
XM_034309811.1 mRNA upstream 44956 21482022 ~ 21513034 (+) True LOC113540568
XM_034309840.1 mRNA upstream 77548 21454118 ~ 21480442 (+) True LOC117598820
XM_034309812.1 mRNA downstream 55255 21620631 ~ 21631906 (+) True rest
XM_034309814.1 mRNA downstream 897778 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 972126 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 1049483 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 1168359 22733735 ~ 22754432 (+) False rnf44
TU254301 other upstream 208904 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 209161 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 209161 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 209161 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 209161 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 80476 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 80704 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 81860 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 93126 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 95049 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile