RNA id: TU254301


Basic Information

Item Value
RNA id TU254301
length 715
RNA type TUCP
GC content 0.48
exon number 3
gene id hopx
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21340416 ~ 21349086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCTTGCCTCAAACTCAATTTGTGCTTCTTGTCTAATCAGGGTggaaaagcaaatcacagCGCCATGGCCTCTAACGGGAGCGGGACGGAGGCGCTGGGCACGCGCCTGGCGGAGGATCAGCTGCGCGTGCTGGAGGAGAATTTCTCTCGCGGGGGCCGGAACCCGGACGGAGCAACGCTCGCGCTCATCGCTGCTGAATGTGGACTCAGTGAGGAGGAGACGCTGAAATGGTTCAGGATGCGTAACGCTCAGTGGAGACAAGCAGAGGGACTGCCTGCTCAACCGGGATCAGTCAAAGACTGAAGACAAGCGAGAAGCTCTCTATCTCTATACGCACACCTCCTGCCGCTAGTCCTCtctatccatcatccatcccttttctttccatccatccttcttattctattcatccatccagtaTGGGACAGTTCTCTTGCTTTCTCAGCTTTGTGCCCCCTTGGctatatgtgaaataaatgtatattgcACACATGAATGTCATGtttacataaagaaataaactgtATATATGGTTATGAGTGAATGCAGTGCTTCCTGCCAATGTATCTTTAAAGGTAATCAAGTGATACGAtgagtgaggaataaaacactttgggggcatgcgttacaggaaaataatctcgATTGACTGTTATCACCCcacagttaattattttaactgCTAACACCatttcccaaagtgttttattgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254255 lncRNA upstream 95631 21198542 ~ 21244785 (+) True G214753
TU254231 lncRNA upstream 154113 21185266 ~ 21186303 (+) True G214731
TU254221 lncRNA upstream 177112 21162900 ~ 21163304 (+) True G214723
TU254190 lncRNA upstream 182328 21144820 ~ 21158088 (+) False G214694
TU254189 lncRNA upstream 182328 21157282 ~ 21158088 (+) True G214694
XR_004579331.1 lncRNA downstream 7764 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA downstream 7764 21356850 ~ 21359059 (+) False LOC117598756
TU254313 lncRNA downstream 18938 21368024 ~ 21368228 (+) True G214798
TU254315 lncRNA downstream 57287 21406373 ~ 21464629 (+) True G214800
XR_004579359.1 lncRNA downstream 65376 21414462 ~ 21416513 (+) True LOC117598826
XM_026916510.2 mRNA upstream 11662 21301643 ~ 21328754 (+) True sec24b
XM_026916148.2 mRNA upstream 46622 21288480 ~ 21293794 (+) True LOC113527948
XM_026916778.2 mRNA upstream 113568 21206459 ~ 21226848 (+) True f8
XM_026916808.2 mRNA upstream 155566 21181413 ~ 21184850 (+) True tlr1
XM_026916764.2 mRNA upstream 258402 21047261 ~ 21082014 (+) True LOC113528291
XM_034309848.1 mRNA downstream 32694 21381780 ~ 21387087 (+) True LOC113527892
XM_034309849.1 mRNA downstream 32694 21381780 ~ 21387087 (+) False LOC113527892
XM_026915990.2 mRNA downstream 41817 21390903 ~ 21402724 (+) True LOC113527856
XM_034309845.1 mRNA downstream 41817 21390903 ~ 21402724 (+) False LOC113527856
XM_034309847.1 mRNA downstream 56254 21405340 ~ 21430458 (+) False LOC117598821
XR_004579430.1 other upstream 1264008 20022509 ~ 20076408 (+) False LOC113528520
TU253418 other upstream 1359036 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 1387130 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 1430251 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 2027198 19301355 ~ 19313218 (+) True gng13b
LOC117598747 other downstream 296766 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 296994 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 298150 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 309416 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 311339 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile