Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034309781.1 |
| length | 587 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 3 |
| gene id | hopx |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21340416 ~ 21349086 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007507 | heart development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU254255 | lncRNA | upstream | 96404 | 21198542 ~ 21244785 (+) | True | G214753 |
| TU254231 | lncRNA | upstream | 154886 | 21185266 ~ 21186303 (+) | True | G214731 |
| TU254221 | lncRNA | upstream | 177885 | 21162900 ~ 21163304 (+) | True | G214723 |
| TU254190 | lncRNA | upstream | 183101 | 21144820 ~ 21158088 (+) | False | G214694 |
| XR_004579331.1 | lncRNA | downstream | 7933 | 21356850 ~ 21359059 (+) | True | LOC117598756 |
| XR_004579332.1 | lncRNA | downstream | 7933 | 21356850 ~ 21359059 (+) | False | LOC117598756 |
| TU254313 | lncRNA | downstream | 19107 | 21368024 ~ 21368228 (+) | True | G214798 |
| TU254315 | lncRNA | downstream | 57456 | 21406373 ~ 21464629 (+) | True | G214800 |
| XR_004579359.1 | lncRNA | downstream | 65545 | 21414462 ~ 21416513 (+) | True | LOC117598826 |
| XM_026916510.2 | mRNA | upstream | 12435 | 21301643 ~ 21328754 (+) | True | sec24b |
| XM_026916148.2 | mRNA | upstream | 47395 | 21288480 ~ 21293794 (+) | True | LOC113527948 |
| XM_026916778.2 | mRNA | upstream | 114341 | 21206459 ~ 21226848 (+) | True | f8 |
| XM_026916808.2 | mRNA | upstream | 156339 | 21181413 ~ 21184850 (+) | True | tlr1 |
| XM_034309853.1 | mRNA | upstream | 259175 | 21061916 ~ 21082014 (+) | False | LOC113528291 |
| XM_034309848.1 | mRNA | downstream | 32863 | 21381780 ~ 21387087 (+) | True | LOC113527892 |
| XM_034309849.1 | mRNA | downstream | 32863 | 21381780 ~ 21387087 (+) | False | LOC113527892 |
| XM_026915990.2 | mRNA | downstream | 41986 | 21390903 ~ 21402724 (+) | True | LOC113527856 |
| XM_034309845.1 | mRNA | downstream | 41986 | 21390903 ~ 21402724 (+) | False | LOC113527856 |
| XM_034309847.1 | mRNA | downstream | 56423 | 21405340 ~ 21430458 (+) | False | LOC117598821 |
| XR_004579430.1 | other | upstream | 1264781 | 20022509 ~ 20076408 (+) | False | LOC113528520 |
| TU253418 | other | upstream | 1359809 | 19978314 ~ 19981380 (+) | True | G214015 |
| XR_004579366.1 | other | upstream | 1387903 | 19933824 ~ 19953286 (+) | False | LOC113528304 |
| TU253379 | other | upstream | 1431024 | 19906202 ~ 19910165 (+) | False | LOC113528458 |
| XR_004579333.1 | other | upstream | 2027971 | 19301355 ~ 19313218 (+) | True | gng13b |
| LOC117598747 | other | downstream | 296935 | 21645852 ~ 21646623 (+) | True | LOC117598747 |
| TU254580 | other | downstream | 297163 | 21646080 ~ 21649152 (+) | True | G215015 |
| LOC117598748 | other | downstream | 298319 | 21647236 ~ 21647803 (+) | True | LOC117598748 |
| LOC117598992 | other | downstream | 309585 | 21658502 ~ 21659107 (+) | True | LOC117598992 |
| LOC117599000 | other | downstream | 311508 | 21660425 ~ 21661039 (+) | True | LOC117599000 |
