RNA id: TU254313


Basic Information

Item Value
RNA id TU254313
length 205
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G214798
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21368024 ~ 21368228 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggagaaagaaaaaggtaaAGAATATTAAGACATAATGCATAAAATTCAGCAATCACTTGGGAGAAAAATAATTGAAACATACCACACTCTAGAGAAAATGTGTTTGGAAAGGTGTGAgctggtgttttattcctttcataccACTGCAGTTTGCCAAGACAAACATTTCATGTTATAAACTAAATAACAGCTAAACCAGTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579331.1 lncRNA upstream 8965 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA upstream 8965 21356850 ~ 21359059 (+) False LOC117598756
TU254255 lncRNA upstream 123239 21198542 ~ 21244785 (+) True G214753
TU254231 lncRNA upstream 181721 21185266 ~ 21186303 (+) True G214731
TU254221 lncRNA upstream 204720 21162900 ~ 21163304 (+) True G214723
TU254315 lncRNA downstream 38145 21406373 ~ 21464629 (+) True G214800
XR_004579359.1 lncRNA downstream 46234 21414462 ~ 21416513 (+) True LOC117598826
TU254318 lncRNA downstream 58746 21426974 ~ 21448404 (+) True G214802
TU254320 lncRNA downstream 79765 21447993 ~ 21466726 (+) True G214804
TU254324 lncRNA downstream 106405 21474633 ~ 21474963 (+) True G214807
XM_034309781.1 mRNA upstream 19107 21341189 ~ 21348917 (+) False hopx
XM_026916224.2 mRNA upstream 19107 21341297 ~ 21348917 (+) False hopx
XM_026916510.2 mRNA upstream 39270 21301643 ~ 21328754 (+) True sec24b
XM_026916148.2 mRNA upstream 74230 21288480 ~ 21293794 (+) True LOC113527948
XM_026916778.2 mRNA upstream 141176 21206459 ~ 21226848 (+) True f8
XM_034309848.1 mRNA downstream 13552 21381780 ~ 21387087 (+) True LOC113527892
XM_034309849.1 mRNA downstream 13552 21381780 ~ 21387087 (+) False LOC113527892
XM_026915990.2 mRNA downstream 22675 21390903 ~ 21402724 (+) True LOC113527856
XM_034309845.1 mRNA downstream 22675 21390903 ~ 21402724 (+) False LOC113527856
XM_034309847.1 mRNA downstream 37112 21405340 ~ 21430458 (+) False LOC117598821
TU254301 other upstream 18938 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 19195 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 19195 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 19195 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 19195 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 277624 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 277852 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 279008 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 290274 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 292197 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile