Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU254318 |
| length | 242 |
| lncRNA type | sense_over |
| GC content | 0.48 |
| exon number | 2 |
| gene id | G214802 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21426974 ~ 21448404 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0021532 | neural tube patterning | biological_process |
| GO:0007498 | mesoderm development | biological_process |
| GO:0021903 | rostrocaudal neural tube patterning | biological_process |
| GO:0030917 | midbrain-hindbrain boundary development | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579359.1 | lncRNA | upstream | 10461 | 21414462 ~ 21416513 (+) | True | LOC117598826 |
| TU254313 | lncRNA | upstream | 58746 | 21368024 ~ 21368228 (+) | True | G214798 |
| XR_004579331.1 | lncRNA | upstream | 67915 | 21356850 ~ 21359059 (+) | True | LOC117598756 |
| XR_004579332.1 | lncRNA | upstream | 67915 | 21356850 ~ 21359059 (+) | False | LOC117598756 |
| TU254255 | lncRNA | upstream | 182189 | 21198542 ~ 21244785 (+) | True | G214753 |
| TU254324 | lncRNA | downstream | 26229 | 21474633 ~ 21474963 (+) | True | G214807 |
| XR_004579360.1 | lncRNA | downstream | 53733 | 21502137 ~ 21505786 (+) | True | LOC117598827 |
| TU254327 | lncRNA | downstream | 64167 | 21512571 ~ 21513040 (+) | False | LOC113540568 |
| TU254249 | lncRNA | downstream | 103145 | 21551549 ~ 21556401 (+) | True | G214747 |
| TU254247 | lncRNA | downstream | 109586 | 21557990 ~ 21565376 (+) | True | LOC113540569 |
| XM_034309846.1 | mRNA | upstream | 13494 | 21405340 ~ 21413480 (+) | True | LOC117598821 |
| XM_026915990.2 | mRNA | upstream | 24250 | 21390903 ~ 21402724 (+) | True | LOC113527856 |
| XM_034309845.1 | mRNA | upstream | 24250 | 21390903 ~ 21402724 (+) | False | LOC113527856 |
| XM_034309848.1 | mRNA | upstream | 39887 | 21381780 ~ 21387087 (+) | True | LOC113527892 |
| XM_034309840.1 | mRNA | downstream | 5714 | 21454118 ~ 21480442 (+) | True | LOC117598820 |
| XM_034309811.1 | mRNA | downstream | 33618 | 21482022 ~ 21513034 (+) | True | LOC113540568 |
| XM_034309843.1 | mRNA | downstream | 66169 | 21514573 ~ 21563801 (+) | False | LOC113540569 |
| XM_034309844.1 | mRNA | downstream | 66169 | 21514573 ~ 21563801 (+) | False | LOC113540569 |
| XM_034309842.1 | mRNA | downstream | 66169 | 21514573 ~ 21521999 (+) | False | LOC113540569 |
| TU254301 | other | upstream | 77888 | 21340416 ~ 21349086 (+) | True | hopx |
| TU254300 | other | upstream | 78145 | 21341247 ~ 21348829 (+) | False | hopx |
| TU254302 | other | upstream | 78145 | 21341247 ~ 21348829 (+) | False | hopx |
| TU254303 | other | upstream | 78145 | 21341247 ~ 21348829 (+) | False | hopx |
| TU254299 | other | upstream | 78145 | 21341566 ~ 21348829 (+) | False | hopx |
| LOC117598747 | other | downstream | 197448 | 21645852 ~ 21646623 (+) | True | LOC117598747 |
| TU254580 | other | downstream | 197676 | 21646080 ~ 21649152 (+) | True | G215015 |
| LOC117598748 | other | downstream | 198832 | 21647236 ~ 21647803 (+) | True | LOC117598748 |
| LOC117598992 | other | downstream | 210098 | 21658502 ~ 21659107 (+) | True | LOC117598992 |
| LOC117599000 | other | downstream | 212021 | 21660425 ~ 21661039 (+) | True | LOC117599000 |
