RNA id: TU254320


Basic Information

Item Value
RNA id TU254320
length 562
lncRNA type sense_over
GC content 0.49
exon number 2
gene id G214804
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21447993 ~ 21466726 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCCCATGGGGGAGAGTTCAATAAGGACCTGATTGGGTTTCCCATGGGGGAGAGTTCAATAAGGACCTGATTGACAGGTCTTGTTTGGAGGGAAGAGAAAGGAGAGCGCGGGAAGAcgggaaaaaaggagagaggacGCCATGTTGGATACAGTTTAGCGCGCTTTGATAAACTTTGGTGGAGATTAACTACATAAGTACTGGCCCACAAAGTTTAGAGCCGTTAACCGGCTACAGTTTGTACCGTATTCTGAAAACAGCAAAGTGACGTGAACAGAAAAGTGGACAGTTGCCGCTCCAGACGCCATTTTCATGCTCGTCGGCTGTTAGGTCTAGAGACACCTGTTGATTCACCACCGGTTGGATGTTGAGTGAACAACTGAACGGCGGGGGGAGGTTCACATCGTGTCCTCGGGAGAGAAGAGCCAAAGCAGGTTTCTTTTCAGAGTTCCACCAGTGACTACATATTGGAGAACGGGACCGAGTGAGCACTTGGTGATATTTTTGTTGCCGTATTTCCAAGGATTTTCCTGTCATATGGGCCCCAACGAGGTCACCAGCG

Function

GO:

id name namespace
GO:0007498 mesoderm development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579359.1 lncRNA upstream 31480 21414462 ~ 21416513 (+) True LOC117598826
TU254313 lncRNA upstream 79765 21368024 ~ 21368228 (+) True G214798
XR_004579331.1 lncRNA upstream 88934 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA upstream 88934 21356850 ~ 21359059 (+) False LOC117598756
TU254255 lncRNA upstream 203208 21198542 ~ 21244785 (+) True G214753
TU254324 lncRNA downstream 7907 21474633 ~ 21474963 (+) True G214807
XR_004579360.1 lncRNA downstream 35411 21502137 ~ 21505786 (+) True LOC117598827
TU254327 lncRNA downstream 45845 21512571 ~ 21513040 (+) False LOC113540568
TU254249 lncRNA downstream 84823 21551549 ~ 21556401 (+) True G214747
TU254247 lncRNA downstream 91264 21557990 ~ 21565376 (+) True LOC113540569
XM_034309847.1 mRNA upstream 17535 21405340 ~ 21430458 (+) False LOC117598821
XM_034309846.1 mRNA upstream 34513 21405340 ~ 21413480 (+) True LOC117598821
XM_026915990.2 mRNA upstream 45269 21390903 ~ 21402724 (+) True LOC113527856
XM_034309845.1 mRNA upstream 45269 21390903 ~ 21402724 (+) False LOC113527856
XM_034309848.1 mRNA upstream 60906 21381780 ~ 21387087 (+) True LOC113527892
XM_034309811.1 mRNA downstream 15296 21482022 ~ 21513034 (+) True LOC113540568
XM_034309843.1 mRNA downstream 47847 21514573 ~ 21563801 (+) False LOC113540569
XM_034309844.1 mRNA downstream 47847 21514573 ~ 21563801 (+) False LOC113540569
XM_034309842.1 mRNA downstream 47847 21514573 ~ 21521999 (+) False LOC113540569
XM_026937154.2 mRNA downstream 75264 21541990 ~ 21546092 (+) True LOC113540583
TU254301 other upstream 98907 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 99164 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 99164 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 99164 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 99164 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 179126 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 179354 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 180510 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 191776 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 193699 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile