RNA id: TU254327


Basic Information

Item Value
RNA id TU254327
length 298
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC113540568
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21482022 ~ 21513040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggtttcatggtgtttgtgtctgtgtggctcTGTGAAGTCATCATCCTTCTGTCGCTGTTAGTGGGAGCGTTTTATATCTACACCAGAATCTacaggaaacagaaaataaCTGAGAATCAGGAAGCTCTGTAAACCTAGATTAGGAACAGAAGAAGCAGTCCACGATTGCTCTCCTCCATGCCAGCAACCCGTCCACCCTGAACCAGCAGAAATGTATAACCATCAATAACAGATGGGTAACAgagaaaacaaattttattcCTCAATCCACATCTTCTTTTCAAAAACTAAACCAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579360.1 lncRNA upstream 6785 21502137 ~ 21505786 (+) True LOC117598827
TU254324 lncRNA upstream 37608 21474633 ~ 21474963 (+) True G214807
TU254320 lncRNA upstream 45845 21447993 ~ 21466726 (+) True G214804
TU254315 lncRNA upstream 47942 21406373 ~ 21464629 (+) True G214800
TU254249 lncRNA downstream 38509 21551549 ~ 21556401 (+) True G214747
TU254247 lncRNA downstream 44950 21557990 ~ 21565376 (+) True LOC113540569
TU254342 lncRNA downstream 104055 21617095 ~ 21617294 (+) True G214825
TU254346 lncRNA downstream 121811 21634851 ~ 21635074 (+) True G214829
TU254607 lncRNA downstream 143221 21656261 ~ 21656835 (+) True G215042
XM_034309840.1 mRNA upstream 32129 21454118 ~ 21480442 (+) True LOC117598820
XM_034309847.1 mRNA upstream 82113 21405340 ~ 21430458 (+) False LOC117598821
XM_034309846.1 mRNA upstream 99091 21405340 ~ 21413480 (+) True LOC117598821
XM_026915990.2 mRNA upstream 109847 21390903 ~ 21402724 (+) True LOC113527856
XM_034309843.1 mRNA downstream 1533 21514573 ~ 21563801 (+) False LOC113540569
XM_034309844.1 mRNA downstream 1533 21514573 ~ 21563801 (+) False LOC113540569
XM_034309842.1 mRNA downstream 1533 21514573 ~ 21521999 (+) False LOC113540569
XM_026937154.2 mRNA downstream 28950 21541990 ~ 21546092 (+) True LOC113540583
XM_034309850.1 mRNA downstream 28950 21541990 ~ 21546092 (+) False LOC113540583
TU254301 other upstream 163485 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 163742 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 163742 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 163742 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 163742 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 132812 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 133040 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 134196 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 145462 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 147385 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile