RNA id: TU254346


Basic Information

Item Value
RNA id TU254346
length 224
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G214829
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21634851 ~ 21635074 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGTTTATACCTGCTATAATGTGTCTAATAAGATACAGTTGTTTTGTAtacattccaaaacattaaatgtaactataaatggacaaaaactcTGATGTGACATTCTTTAATCAGTAAAACCTGTCACTGGCAAATTTTCATTGTAAGAGCAacgtgttataggaaaataatcaacttcggggtgatTAACAGTAACTCCTGTTTGCATAATTATGGATTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254342 lncRNA upstream 17557 21617095 ~ 21617294 (+) True G214825
TU254247 lncRNA upstream 69475 21557990 ~ 21565376 (+) True LOC113540569
TU254249 lncRNA upstream 78450 21551549 ~ 21556401 (+) True G214747
TU254327 lncRNA upstream 121811 21512571 ~ 21513040 (+) False LOC113540568
XR_004579360.1 lncRNA upstream 129065 21502137 ~ 21505786 (+) True LOC117598827
TU254607 lncRNA downstream 21187 21656261 ~ 21656835 (+) True G215042
TU254625 lncRNA downstream 82618 21717692 ~ 21718076 (+) True G215055
TU254629 lncRNA downstream 89537 21724611 ~ 22137078 (+) True G215059
TU254636 lncRNA downstream 139149 21774223 ~ 21807343 (+) True G215064
XR_004579408.1 lncRNA downstream 252957 21888031 ~ 21888800 (+) True LOC117598973
XM_034309812.1 mRNA upstream 2945 21620631 ~ 21631906 (+) True rest
XM_034309843.1 mRNA upstream 71050 21514573 ~ 21563801 (+) False LOC113540569
XM_034309844.1 mRNA upstream 71050 21514573 ~ 21563801 (+) False LOC113540569
XM_026937154.2 mRNA upstream 88759 21541990 ~ 21546092 (+) True LOC113540583
XM_034309850.1 mRNA upstream 88759 21541990 ~ 21546092 (+) False LOC113540583
XM_034309814.1 mRNA downstream 828080 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 902428 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 979785 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 1098661 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 1105866 22740940 ~ 22754432 (+) True rnf44
TU254301 other upstream 285765 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 286022 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 286022 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 286022 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 286022 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 10778 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 11006 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 12162 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 23428 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 25351 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile