RNA id: XM_026916242.2


Basic Information

Item Value
RNA id XM_026916242.2
length 2601
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC113528016
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21352281 ~ 21359190 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTCTGCCACCTGAGGAGCATGGCGTCTCTGAACACGAgGCATTTCAGCTCAACTCCTTCACCCAGaatcCTGCAGCTCGCTCGGCCCCGAGAATCTAAAACAGTTTGGCTCACGACACCAGAGAAGGTGACTTGGGGAAACCAGGAGACAATATGGTCTTCGTCCTGGACTGCGTTAAAAGCCGTACCAACCTCAAGGATTCTGGCTCTGTCGCAACCCAAAAAAGATTTCGCTGCCCTCCATCAAGACCTGCTTAGGAAAAGGCACGAGGAGACTGAGGAAACAAGGAAGAAGAGGACGTGTTTTCCTTCTAGTACAGCACAGTATGAACATGTCGCGCGCCTGGCAACCCCAGATTTCCGTCCCAGGAGCTTCCAGATAGTGAGcccCCCTCACACGAAGCAATGTGAGCACAGCTGTCCCGTGTGGCACATCAGCTCTGCTGTGCGGAATGCTGTCGCCTCTCCACGTATTCTTCAGCTTGCTCAGCCCAGACACATACACCCTGAGTACAAGAGCAACCGTCAGaACGTAGAAACATGGATCTCGTGTGCAGCTAAAACAGCTCAGGCGAGTCCAAGACTCGAGCAGCTGTGTGTGCCTAAACTGCGAGAGAGCAAACTCTTCTACCAGCATGGCTGTCCTGAGAGCCCCATCAGACCTGTaagaGTGTCTAAAGGAGCAAGAACAGCCACAGCAAGCGCTCGTGTGAGAGAGCTGTCCACCCCAAAGAGCTATATCaatccctgaaaaaaaaagaaataaagagacagagacctCATAATCACACACCAGGCGTTACTGTCACGgttaaagaaaagagagggagaaaacaaGAGTAACAGATGGACTGATTAAATAACCACACTAAGAAGCGTATAAAAGAGTTTccgtgtttttttcttctcttctctttttctgcttttgctATCTGCAAGCCTCAGACTTTACCTTGGAACGTTTCAGTCTGAACTTGGAAAGGTTGTGTTATCTTAAGCAAAATGCCAGAATAGTAAACTCCAGCCAGCCAACACAGAGAACAGGAGAACTTTTCTCAGTCGATCAgtgtctgttttgtgtgtttttcacatcaGTTTACACAGCTTTAGTTTCGGTTACACAACAAGAATggagagtcagtgtgtgttggcAAAAACGTTACAACTCAAACACAGTCCTTCTGTAATCGATTTGCAGAGTAGGCTGCTTCTGTTTGtgtgaatattgaatattgaaacTATGAAACGATCCAAATGACATTTCTGATTGTgatataagtaaggaataaaagaggaTGGGccgtgctgttttaggaaagtaatcaatgacagggtgatgtgatgcagctAATGTGAAGCGTTTTATTTCTTCAAAACTACATcagtttgccaacactaacaattttttttattaattacagaaCATATTGTGcaattatccatttatagctaaatttaatgtaaagcactgacactggagactcctttcaaaaatgctaaatatacgTCTCCTCACTGAAAATGTCAAATCAgcgattacacgtttttttttttaatctgtttatgtggaatatCCACCATACAaatactctcagagctgctgttgcagaaaattaatcaataccttctgaccaatcagaatcattttgCATTTAAGGACTTTTACAAGTCTCTTACTATTAGTTTTGGATTATTTTGTGACTTCCTAAGgcaatttttcttcatttattttgtctttcatttcattgtcGCGGCTTTGCGTAATTGTATAATCTatattcttttgtttgtttttagtgttAAAAATGACTCTGATTACTGATTTTTCACCTGTTTGCCTTAAAGAAGTCTTAAATAAATACTcctgtgtagactttttataacTATATAGTTTTATAAATTGTATTAGATTGTACTGTAACAATTTATTAAgacaataataaacataatttctAGCATTTATTCTAATATTTAGGCTGTATGTTGTAACCGGTTTTCATTAGACGAGCGTCATAAAATGAACATAGTACTCAGTTTTGTAGACAGGTacattttttcatgtaaaaaccaagggtgtacaaacttttgcaaaaCCTACTGATAACATGCAGTTTCTTTTTCAAACATTAGGTGCCAGCATTATGTAAAGCCACATCCAAAACTTCTTTTGCACACGCGTGTCACTTTTACACAACTTTTATTCTACATCTACATGATACGCAAGGATTTTCAAAATGGATgtacaaaaaacaaattaattaaaaaattaaaaaattgagCAAAAGCATTCAGccaaaatgaattatttctaCACGAGCTGTAGTGGGGCTGACAAGTTACCTGGCAAACTGGGTGTATTAATTACCAAGCAGCAATGACAtggcattcatttttaatagcGAAAAGGCAAAATTATATCAATCTATGACAAAATTACAGCCTCTGTAtctgacaggaagtgacatgCCATGAAAACAAGCACAAGACAGCGTTTAGGTGAACGCTGGGTGCCGACTCGCATACCCTCACATAcgtcctcttataccacagcagtttaccaacaattacattctCTATTTGTTAATCAACGACgcccaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254446 lncRNA downstream 22606 21327660 ~ 21329675 (-) True G214917
TU254389 lncRNA downstream 94430 21236808 ~ 21257851 (-) False slc16a2
TU254391 lncRNA downstream 107496 21236858 ~ 21244785 (-) False slc16a2
TU254118 lncRNA downstream 448240 20900085 ~ 20904041 (-) False spry1
TU254119 lncRNA downstream 448444 20903098 ~ 20903837 (-) True G214626
TU254470 lncRNA upstream 507 21359697 ~ 21359899 (-) True G214933
TU254478 lncRNA upstream 47680 21406870 ~ 21416430 (-) True G214941
TU254479 lncRNA upstream 47680 21406870 ~ 21425414 (-) False G214941
TU254480 lncRNA upstream 47680 21406870 ~ 21458183 (-) False G214941
TU254489 lncRNA upstream 60578 21419768 ~ 21468331 (-) True G214947
XM_026917302.2 mRNA downstream 79774 21236802 ~ 21272507 (-) True slc16a2
XM_026916809.2 mRNA downstream 150412 21184962 ~ 21201869 (-) True ints10
XM_026916810.2 mRNA downstream 150539 21184962 ~ 21201742 (-) False ints10
XM_034310189.1 mRNA downstream 150539 21184962 ~ 21201742 (-) False ints10
XM_026917194.2 mRNA downstream 177749 21165851 ~ 21174532 (-) True klb
XM_026916545.2 mRNA upstream 1372 21360562 ~ 21367112 (-) True arl9
XM_026916544.2 mRNA upstream 1372 21360562 ~ 21367109 (-) False arl9
XM_034309841.1 mRNA upstream 9564 21368754 ~ 21380216 (-) True srp72
XM_026936343.2 mRNA upstream 226908 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA upstream 226908 21586098 ~ 21613875 (-) True b4galt1l
TU254170 other downstream 325022 21014439 ~ 21027259 (-) True fgf2
trnal-aag_9 other downstream 939351 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 1288791 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 1903947 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 2275941 19076269 ~ 19076340 (-) True trnat-cgu_6
LOC113546932 other upstream 312972 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 313632 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 316448 21675638 ~ 21676807 (-) True LOC117598868
TU254923 other upstream 317081 21676271 ~ 22215359 (-) False G215187
LOC117598954 other upstream 324834 21684024 ~ 21684645 (-) True LOC117598954

Expression Profile