RNA id: TU254484


Basic Information

Item Value
RNA id TU254484
length 1815
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC113540570
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21485240 ~ 21495618 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGCATTGTTTTTTCTTCGtctaatcattattttaaaaagacagactCACCAGGACATGGGTGGAGTTGAGTGGTATTGTAGTTATAGCTGACATGATTTTCTACACGGCAGGTGACGTTTCCATGATGATCTTTATTCAGTATGAGAGTGCTGATCCCGTTCTCCAGTTGAGGGAGTGTGTTTAAATCAGGAGTCCAGTTGAAGCGGAGATTGTCTCCATCAGCAGAACAGTACACTTTCATGACTCCAGGGGACAAGCAGCTGTACCACAATTTCACTGAGGACACCTCAGCTGCAGATTAGAGATAATCAAATTTACTATGGATACCTGAATCAAGACTATCAAACTGAAGAAACTGACTGTCTCTCCaaccacacacaggacaaagacaTCCCTTCACACCCAACGGACCTAAGATGGCTCCAGCCTGTCTAGGCTAAACGACAGGTCATTAAACATTAAGGGATGCTAACGGTCGTCAGAATgcagaaaaccccaaaaaaaggGTGTAAATTACCCCTCCGTGGAGCTGAACTCGAATTGACCACCCTTAACAGAtgccttttgtttggattagggAACTGGAGGAGATTAATCACACTCCACACCACGCTACATCCTGCTGAGGTTGAAGTGACCTTTGGTCTCAACTGAATCAGCAAAGGACTCCAGGCCTAAGACTCCTCcactttttaagaatgttcttttctttctctgtatctgccttattttatttcaatgaaGTTGCTGAGTtttgtgttaaatctgtatgGGGAACATGCcttcacacatactgtattaaaCCAGAGAGCAAGAGTTAACTTACACTTCAGCCATGGTGACTTCTCACATGGTGGGAAGTCCGGTGCTACCTCCAAATCATGTATTCAAACCAGCATTATATTACAACCCCACTATTAATGGAGTTACATAATATtaagtctgtttctttctgtaaacacGCCATTATATAGCTAATGGCCATGGCTAATGTATGTCATGTGTGGTATCTGCATGCTTGTCTTCATGTGCAGAAGCTGTTGATGATTTGCAATTCTCAGTACctcatatcatacatttattataagcattaaaggtaaataagacCACATTACAGTGGATATTGAGAAGGGGGCGACCCGGGGGGTCACTTGCAAATTAGCTGGAGGGCCAGCCAAGCCAATCTCCAATCATCTCCAAACCGGCCTGCGGTTGGCTGAAGACCTCAAGAGGCTGGCTCATCTAAACTAACATAAAACCGCATGCccaacacagaaacacacaggaaTGCAACAACACAAGAACAAAGAACAGAGCCAGAGCGGGAGCTGAACTGGAACGGCGCTGGGACCAGAACAGAGCTGGAACAGGAAGAGAACCTGCACAAGAAGATCCCAAGACTTGCATCACTGAACATTGCTTGACTCGACCCTTCGCCCAGCCGTCCAGACTCTAGCCTCCCTCTCCGGCGACGATCAATAACTTCTCTAACATCCTCCAACTCCGGTCCGACTAGAACCTGCTGACCAACACCAACTCCTTCCATTCACCACCTAGGCAAAGCAAGTATTGATACCTCccaacttcattaagctggtgcAGTAAACCTAAATCTCTTTTCACCAGTTAATGCTGATTTATCAGGTTTATGTCTAAGAACTCAACTCTCTGATTATTCTCACTGGTTCTTCTCATTCCATATCCctacatgtatgaatgtgtatgtctgtgtgtgtgtgttggttgtgtgtagtagtttaggaTATATGTGTAGTAGTTTAGTATATGTGTATAGTAGCTTAGTATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254489 lncRNA downstream 16909 21419768 ~ 21468331 (-) True G214947
TU254502 lncRNA downstream 18377 21448473 ~ 21466863 (-) True G214954
TU254504 lncRNA downstream 20437 21464373 ~ 21464803 (-) True G214956
TU254488 lncRNA downstream 22889 21442889 ~ 21462351 (-) True G214946
TU254480 lncRNA downstream 27057 21406870 ~ 21458183 (-) False G214941
XR_004579353.1 lncRNA upstream 3932 21496429 ~ 21497974 (-) True LOC117598822
XR_004579358.1 lncRNA upstream 8053 21500550 ~ 21504305 (-) True LOC117598825
TU254496 lncRNA upstream 23430 21515927 ~ 21556656 (-) False LOC117598823
TU254506 lncRNA upstream 24363 21516860 ~ 21558172 (-) True G214958
TU254507 lncRNA upstream 24363 21516860 ~ 21517608 (-) False G214958
XM_034309841.1 mRNA downstream 105024 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 118128 21360562 ~ 21367112 (-) True arl9
XM_026916544.2 mRNA downstream 118131 21360562 ~ 21367109 (-) False arl9
XM_026916242.2 mRNA downstream 126050 21352281 ~ 21359190 (-) True LOC113528016
XM_026936343.2 mRNA upstream 93601 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA upstream 93601 21586098 ~ 21613875 (-) True b4galt1l
XM_034309813.1 mRNA upstream 834229 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 907188 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 1060227 22552724 ~ 22582102 (-) True topaz1
TU254170 other downstream 457981 21014439 ~ 21027259 (-) True fgf2
trnal-aag_9 other downstream 1072310 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 1421750 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 2036906 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 2408900 19076269 ~ 19076340 (-) True trnat-cgu_6
LOC113546932 other upstream 179665 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 180325 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 183141 21675638 ~ 21676807 (-) True LOC117598868
TU254923 other upstream 183774 21676271 ~ 22215359 (-) False G215187
LOC117598954 other upstream 191527 21684024 ~ 21684645 (-) True LOC117598954

Expression Profile