Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU254499 |
| length | 378 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | LOC117598823 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21436221 ~ 21556656 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU254507 | lncRNA | downstream | 1485 | 21516860 ~ 21517608 (-) | False | G214958 |
| TU254491 | lncRNA | downstream | 13301 | 21435594 ~ 21505792 (-) | True | G214949 |
| XR_004579358.1 | lncRNA | downstream | 14788 | 21500550 ~ 21504305 (-) | True | LOC117598825 |
| XR_004579353.1 | lncRNA | downstream | 21119 | 21496429 ~ 21497974 (-) | True | LOC117598822 |
| XR_004579356.1 | lncRNA | downstream | 23475 | 21492275 ~ 21495618 (-) | False | LOC113540570 |
| TU254525 | lncRNA | upstream | 58228 | 21614884 ~ 21615115 (-) | True | G214975 |
| TU254520 | lncRNA | upstream | 59226 | 21615882 ~ 21616213 (-) | True | G214970 |
| TU254526 | lncRNA | upstream | 59946 | 21616602 ~ 21616832 (-) | True | G214976 |
| TU254527 | lncRNA | upstream | 64022 | 21620678 ~ 21621921 (-) | True | G214977 |
| TU254528 | lncRNA | upstream | 71473 | 21628129 ~ 21631867 (-) | True | G214978 |
| XM_034309841.1 | mRNA | downstream | 138877 | 21368754 ~ 21380216 (-) | True | srp72 |
| XM_026916545.2 | mRNA | downstream | 151981 | 21360562 ~ 21367112 (-) | True | arl9 |
| XM_026916544.2 | mRNA | downstream | 151984 | 21360562 ~ 21367109 (-) | False | arl9 |
| XM_026916242.2 | mRNA | downstream | 159903 | 21352281 ~ 21359190 (-) | True | LOC113528016 |
| XM_026936343.2 | mRNA | upstream | 29442 | 21586098 ~ 21613875 (-) | False | b4galt1l |
| XM_026936342.2 | mRNA | upstream | 29442 | 21586098 ~ 21613875 (-) | True | b4galt1l |
| XM_034309813.1 | mRNA | upstream | 770070 | 22326726 ~ 22345779 (-) | True | LOC117598814 |
| XM_034310140.1 | mRNA | upstream | 843029 | 22399685 ~ 22419910 (-) | False | LOC117598969 |
| XM_034309681.1 | mRNA | upstream | 996068 | 22552724 ~ 22582102 (-) | True | topaz1 |
| TU254170 | other | downstream | 491834 | 21014439 ~ 21027259 (-) | True | fgf2 |
| trnal-aag_9 | other | downstream | 1106163 | 20412849 ~ 20412930 (-) | True | trnal-aag_9 |
| TU253598 | other | downstream | 1455603 | 20040423 ~ 20063490 (-) | False | slc2a9l2 |
| TU253095 | other | downstream | 2070759 | 19444989 ~ 19448334 (-) | False | rbbp6 |
| trnat-cgu_6 | other | downstream | 2442753 | 19076269 ~ 19076340 (-) | True | trnat-cgu_6 |
| LOC113546932 | other | upstream | 115506 | 21672162 ~ 21683433 (-) | True | LOC113546932 |
| LOC117598919 | other | upstream | 116166 | 21672822 ~ 21673330 (-) | True | LOC117598919 |
| LOC117598868 | other | upstream | 118982 | 21675638 ~ 21676807 (-) | True | LOC117598868 |
| TU254923 | other | upstream | 119615 | 21676271 ~ 22215359 (-) | False | G215187 |
| LOC117598954 | other | upstream | 127368 | 21684024 ~ 21684645 (-) | True | LOC117598954 |
